miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 5' -55.2 NC_002512.2 + 221347 0.73 0.755847
Target:  5'- --gAGACCGCGGCcucgccgcuccgugUCGGuGGUgUGUCCu -3'
miRNA:   3'- cuaUCUGGCGCUG--------------AGCCuCCA-GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 77831 0.72 0.76777
Target:  5'- cGAU-GACCGCGACcgucuccguucUCGGAGGUCcgcgguGUCg -3'
miRNA:   3'- -CUAuCUGGCGCUG-----------AGCCUCCAG------CAGg -5'
9291 5' -55.2 NC_002512.2 + 204650 0.72 0.76777
Target:  5'- --gGGACgGCGACgcgCGGGGGaUCG-CCg -3'
miRNA:   3'- cuaUCUGgCGCUGa--GCCUCC-AGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 81890 0.72 0.776813
Target:  5'- --gAGGCCGUGguguACUcgCGGAGGUCGUgCg -3'
miRNA:   3'- cuaUCUGGCGC----UGA--GCCUCCAGCAgG- -5'
9291 5' -55.2 NC_002512.2 + 224619 0.72 0.79453
Target:  5'- ---cGACCG-GGCUCGG-GGUCG-CCg -3'
miRNA:   3'- cuauCUGGCgCUGAGCCuCCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 159555 0.72 0.803188
Target:  5'- cGAUGGGCCGgGA-UCGGccuuguugacGGGUCaGUCCg -3'
miRNA:   3'- -CUAUCUGGCgCUgAGCC----------UCCAG-CAGG- -5'
9291 5' -55.2 NC_002512.2 + 183505 0.71 0.811702
Target:  5'- ---cGGCCGCGAgggGGAGGcCGUCCu -3'
miRNA:   3'- cuauCUGGCGCUgagCCUCCaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 103363 0.71 0.811702
Target:  5'- --gGGGCCGCGG-UCG--GGUCGUCCg -3'
miRNA:   3'- cuaUCUGGCGCUgAGCcuCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 139024 0.71 0.811702
Target:  5'- ---cGACgGCGGCgCGGAcGGcUCGUCCa -3'
miRNA:   3'- cuauCUGgCGCUGaGCCU-CC-AGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 130978 0.71 0.811702
Target:  5'- -cUGGuCCGaCGgaACUCGGAGcuGUCGUCCg -3'
miRNA:   3'- cuAUCuGGC-GC--UGAGCCUC--CAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 184212 0.71 0.811702
Target:  5'- --cGGACCGCGGguucuCUCuGGGGUCGaCCg -3'
miRNA:   3'- cuaUCUGGCGCU-----GAGcCUCCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 131773 0.71 0.820064
Target:  5'- --cAGAgCGCGAC---GAGGUCGUCCc -3'
miRNA:   3'- cuaUCUgGCGCUGagcCUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 90654 0.71 0.820064
Target:  5'- ---cGGCCGCGGuCUCGGA-GUCGgcggCCg -3'
miRNA:   3'- cuauCUGGCGCU-GAGCCUcCAGCa---GG- -5'
9291 5' -55.2 NC_002512.2 + 155680 0.71 0.820064
Target:  5'- --gGGACCGCGGCccaCGGAcGUCG-CCg -3'
miRNA:   3'- cuaUCUGGCGCUGa--GCCUcCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 155043 0.71 0.828267
Target:  5'- --cGGAUCGCGACggGGAGGgucucCGUUCg -3'
miRNA:   3'- cuaUCUGGCGCUGagCCUCCa----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 189982 0.71 0.844168
Target:  5'- --gGGACCGCGuCUacaGGAaGGUCGaCCu -3'
miRNA:   3'- cuaUCUGGCGCuGAg--CCU-CCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 36377 0.71 0.844168
Target:  5'- aGUGcACCGUGACguuggCGcgaccGAGGUCGUCCa -3'
miRNA:   3'- cUAUcUGGCGCUGa----GC-----CUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 5032 0.71 0.844168
Target:  5'- --cAGGCCGUGGCcauggccgUGGAGGUauacgCGUCCa -3'
miRNA:   3'- cuaUCUGGCGCUGa-------GCCUCCA-----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 85233 0.71 0.851853
Target:  5'- --cGGACCGCGAacaGGuGGUCGuagaUCCg -3'
miRNA:   3'- cuaUCUGGCGCUgagCCuCCAGC----AGG- -5'
9291 5' -55.2 NC_002512.2 + 152455 0.7 0.859352
Target:  5'- --cGGGCgCGCGGCguugGGAGG-CGUCCc -3'
miRNA:   3'- cuaUCUG-GCGCUGag--CCUCCaGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.