miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 5' -55.2 NC_002512.2 + 46164 0.69 0.906232
Target:  5'- aAUAGGCgaaGCGGaucucCUCGGAGGUC-UCCc -3'
miRNA:   3'- cUAUCUGg--CGCU-----GAGCCUCCAGcAGG- -5'
9291 5' -55.2 NC_002512.2 + 49816 0.7 0.866661
Target:  5'- --gAGAaaCUGCGGagacaGGGGGUCGUCCg -3'
miRNA:   3'- cuaUCU--GGCGCUgag--CCUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 57025 0.67 0.961857
Target:  5'- ---uGACCGgGGggagCGGAGGccgCGUCCg -3'
miRNA:   3'- cuauCUGGCgCUga--GCCUCCa--GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 58044 0.66 0.97614
Target:  5'- ---cGGCCGCGGC-CGGAc--CGUCCc -3'
miRNA:   3'- cuauCUGGCGCUGaGCCUccaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 68919 0.67 0.9651
Target:  5'- -cUGGccGCCGCGGcCUCGGGGGga-UCCc -3'
miRNA:   3'- cuAUC--UGGCGCU-GAGCCUCCagcAGG- -5'
9291 5' -55.2 NC_002512.2 + 71231 0.66 0.97016
Target:  5'- cGAU-GACCGUGGcCUCGacgucggggucgaaGGGGUCGgagCCg -3'
miRNA:   3'- -CUAuCUGGCGCU-GAGC--------------CUCCAGCa--GG- -5'
9291 5' -55.2 NC_002512.2 + 71588 0.7 0.887388
Target:  5'- ---cGACCGCGGcCUUGGGGGcCGgcacgCCc -3'
miRNA:   3'- cuauCUGGCGCU-GAGCCUCCaGCa----GG- -5'
9291 5' -55.2 NC_002512.2 + 74316 0.67 0.95841
Target:  5'- --gAGACCGCG--UCaGAGGUCccauaGUCCg -3'
miRNA:   3'- cuaUCUGGCGCugAGcCUCCAG-----CAGG- -5'
9291 5' -55.2 NC_002512.2 + 75201 0.68 0.93277
Target:  5'- --cGGACgGCcGCUCGGAgccggacGGUCGcCCg -3'
miRNA:   3'- cuaUCUGgCGcUGAGCCU-------CCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 76747 0.7 0.866661
Target:  5'- --cGGACCGCGACcCGGAucgccCGUCCc -3'
miRNA:   3'- cuaUCUGGCGCUGaGCCUcca--GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 77831 0.72 0.76777
Target:  5'- cGAU-GACCGCGACcgucuccguucUCGGAGGUCcgcgguGUCg -3'
miRNA:   3'- -CUAuCUGGCGCUG-----------AGCCUCCAG------CAGg -5'
9291 5' -55.2 NC_002512.2 + 78670 0.68 0.94681
Target:  5'- --cGGcGCCGgGGCUCGGAGccuaaGUCCg -3'
miRNA:   3'- cuaUC-UGGCgCUGAGCCUCcag--CAGG- -5'
9291 5' -55.2 NC_002512.2 + 78950 0.69 0.904435
Target:  5'- ---cGGCCGCcggagccuaaguccGGCUCGGAcuuaGcGUCGUCCg -3'
miRNA:   3'- cuauCUGGCG--------------CUGAGCCU----C-CAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 79936 0.66 0.980582
Target:  5'- --aAGGCCgagGCGGCgCGGGGGUcCG-CCu -3'
miRNA:   3'- cuaUCUGG---CGCUGaGCCUCCA-GCaGG- -5'
9291 5' -55.2 NC_002512.2 + 80679 0.67 0.968144
Target:  5'- ---cGGCgGCGGCgaCGGGGGcgagcggCGUCCg -3'
miRNA:   3'- cuauCUGgCGCUGa-GCCUCCa------GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 81890 0.72 0.776813
Target:  5'- --gAGGCCGUGguguACUcgCGGAGGUCGUgCg -3'
miRNA:   3'- cuaUCUGGCGC----UGA--GCCUCCAGCAgG- -5'
9291 5' -55.2 NC_002512.2 + 81918 0.68 0.927277
Target:  5'- gGAUAGACCGUGACgacgaaaccgaGcGAGGccUCGUCg -3'
miRNA:   3'- -CUAUCUGGCGCUGag---------C-CUCC--AGCAGg -5'
9291 5' -55.2 NC_002512.2 + 83823 0.69 0.900166
Target:  5'- ---cGGCgGCGGCUcCGGgcccGGGUCGUCg -3'
miRNA:   3'- cuauCUGgCGCUGA-GCC----UCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 84160 0.68 0.94681
Target:  5'- ---uGGCCGCG-Cg-GGAGGUCccgGUCCa -3'
miRNA:   3'- cuauCUGGCGCuGagCCUCCAG---CAGG- -5'
9291 5' -55.2 NC_002512.2 + 85233 0.71 0.851853
Target:  5'- --cGGACCGCGAacaGGuGGUCGuagaUCCg -3'
miRNA:   3'- cuaUCUGGCGCUgagCCuCCAGC----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.