miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 5' -55.2 NC_002512.2 + 85775 1.13 0.003764
Target:  5'- aGAUAGACCGCGACUCGGAGGUCGUCCg -3'
miRNA:   3'- -CUAUCUGGCGCUGAGCCUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 46164 0.69 0.906232
Target:  5'- aAUAGGCgaaGCGGaucucCUCGGAGGUC-UCCc -3'
miRNA:   3'- cUAUCUGg--CGCU-----GAGCCUCCAGcAGG- -5'
9291 5' -55.2 NC_002512.2 + 78950 0.69 0.904435
Target:  5'- ---cGGCCGCcggagccuaaguccGGCUCGGAcuuaGcGUCGUCCg -3'
miRNA:   3'- cuauCUGGCG--------------CUGAGCCU----C-CAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 86597 0.7 0.864489
Target:  5'- ----cGCCGCGAUggUCGGGGGgagcggucgguuccUCGUCCu -3'
miRNA:   3'- cuaucUGGCGCUG--AGCCUCC--------------AGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 159555 0.72 0.803188
Target:  5'- cGAUGGGCCGgGA-UCGGccuuguugacGGGUCaGUCCg -3'
miRNA:   3'- -CUAUCUGGCgCUgAGCC----------UCCAG-CAGG- -5'
9291 5' -55.2 NC_002512.2 + 4433 0.68 0.933256
Target:  5'- uGGUAGACCgGCGgggugccggGCgCGGGGGUCGgcgUCg -3'
miRNA:   3'- -CUAUCUGG-CGC---------UGaGCCUCCAGCa--GG- -5'
9291 5' -55.2 NC_002512.2 + 91486 0.68 0.928296
Target:  5'- uGGUGGcCCGCGGCUCGaagcgcAGGcuccguugCGUCCg -3'
miRNA:   3'- -CUAUCuGGCGCUGAGCc-----UCCa-------GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 11153 0.74 0.701784
Target:  5'- --cGGACaCGCG-CUCGacGGGUCGUCCg -3'
miRNA:   3'- cuaUCUG-GCGCuGAGCc-UCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 120820 0.7 0.880684
Target:  5'- --cGGAcCCGgGACgcggCGGGuccGGUCGUCCc -3'
miRNA:   3'- cuaUCU-GGCgCUGa---GCCU---CCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 76747 0.7 0.866661
Target:  5'- --cGGACCGCGACcCGGAucgccCGUCCc -3'
miRNA:   3'- cuaUCUGGCGCUGaGCCUcca--GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 154318 0.74 0.67252
Target:  5'- --cGGACCGgGAUcCGGA-GUCGUCCg -3'
miRNA:   3'- cuaUCUGGCgCUGaGCCUcCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 139244 0.75 0.633106
Target:  5'- --gAGACCGCGGCcgCGGcgccGGGUCGcgCCg -3'
miRNA:   3'- cuaUCUGGCGCUGa-GCC----UCCAGCa-GG- -5'
9291 5' -55.2 NC_002512.2 + 11067 0.68 0.942512
Target:  5'- --aGGGCCGCGgaggGCgagaCGGAGcggacggcgguGUCGUCCg -3'
miRNA:   3'- cuaUCUGGCGC----UGa---GCCUC-----------CAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 46098 0.68 0.937995
Target:  5'- --gGGucACCGCGACaaaggCGGAgGGUCGcCCc -3'
miRNA:   3'- cuaUC--UGGCGCUGa----GCCU-CCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 83823 0.69 0.900166
Target:  5'- ---cGGCgGCGGCUcCGGgcccGGGUCGUCg -3'
miRNA:   3'- cuauCUGgCGCUGA-GCC----UCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 130978 0.71 0.811702
Target:  5'- -cUGGuCCGaCGgaACUCGGAGcuGUCGUCCg -3'
miRNA:   3'- cuAUCuGGC-GC--UGAGCCUC--CAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 139024 0.71 0.811702
Target:  5'- ---cGACgGCGGCgCGGAcGGcUCGUCCa -3'
miRNA:   3'- cuauCUGgCGCUGaGCCU-CC-AGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 123025 0.76 0.593678
Target:  5'- ---cGugCGCGACgaGGAGGUCGUCg -3'
miRNA:   3'- cuauCugGCGCUGagCCUCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 49816 0.7 0.866661
Target:  5'- --gAGAaaCUGCGGagacaGGGGGUCGUCCg -3'
miRNA:   3'- cuaUCU--GGCGCUgag--CCUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 116316 0.7 0.880684
Target:  5'- --cGGucacCCGCGACUUcuucGAGGUCGUCUu -3'
miRNA:   3'- cuaUCu---GGCGCUGAGc---CUCCAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.