miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 5' -55.2 NC_002512.2 + 86597 0.7 0.864489
Target:  5'- ----cGCCGCGAUggUCGGGGGgagcggucgguuccUCGUCCu -3'
miRNA:   3'- cuaucUGGCGCUG--AGCCUCC--------------AGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 76747 0.7 0.866661
Target:  5'- --cGGACCGCGACcCGGAucgccCGUCCc -3'
miRNA:   3'- cuaUCUGGCGCUGaGCCUcca--GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 49816 0.7 0.866661
Target:  5'- --gAGAaaCUGCGGagacaGGGGGUCGUCCg -3'
miRNA:   3'- cuaUCU--GGCGCUgag--CCUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 91797 0.7 0.866661
Target:  5'- --cGGGCUGgagGACUCGGuGGGUCGUUCc -3'
miRNA:   3'- cuaUCUGGCg--CUGAGCC-UCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 183959 0.7 0.866661
Target:  5'- --gGGACgCGCG-CUCGGGcGUCGUCg -3'
miRNA:   3'- cuaUCUG-GCGCuGAGCCUcCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 92551 0.7 0.87307
Target:  5'- ---cGGCCGCGGCgacgacgUCGGAGG-CG-CCg -3'
miRNA:   3'- cuauCUGGCGCUG-------AGCCUCCaGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 132104 0.7 0.873773
Target:  5'- --cGGACCGgGGCUCGaGGGcCGcCCg -3'
miRNA:   3'- cuaUCUGGCgCUGAGCcUCCaGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 154828 0.7 0.880002
Target:  5'- ---cGGCgGCGGCaguagugUCGGAGGgggcagCGUCCa -3'
miRNA:   3'- cuauCUGgCGCUG-------AGCCUCCa-----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 127821 0.7 0.880684
Target:  5'- --gGGuCC-CGGCUCcgGGAGGUCGUCg -3'
miRNA:   3'- cuaUCuGGcGCUGAG--CCUCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 116316 0.7 0.880684
Target:  5'- --cGGucacCCGCGACUUcuucGAGGUCGUCUu -3'
miRNA:   3'- cuaUCu---GGCGCUGAGc---CUCCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 120820 0.7 0.880684
Target:  5'- --cGGAcCCGgGACgcggCGGGuccGGUCGUCCc -3'
miRNA:   3'- cuaUCU-GGCgCUGa---GCCU---CCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 155380 0.7 0.887388
Target:  5'- --gGGACCGCGagGCUgGcGAGGUccucucCGUCCu -3'
miRNA:   3'- cuaUCUGGCGC--UGAgC-CUCCA------GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 211782 0.7 0.887388
Target:  5'- --gAGGCCcggGUGGCcgCGGGGGcCGUCCc -3'
miRNA:   3'- cuaUCUGG---CGCUGa-GCCUCCaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 199500 0.7 0.887388
Target:  5'- --aGGGCCGCGAggaUCaggucGAGGUCGUCg -3'
miRNA:   3'- cuaUCUGGCGCUg--AGc----CUCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 71588 0.7 0.887388
Target:  5'- ---cGACCGCGGcCUUGGGGGcCGgcacgCCc -3'
miRNA:   3'- cuauCUGGCGCU-GAGCCUCCaGCa----GG- -5'
9291 5' -55.2 NC_002512.2 + 95760 0.69 0.893884
Target:  5'- ----cGCCGCGACggccgccuggaCGGGGG-CGUCCg -3'
miRNA:   3'- cuaucUGGCGCUGa----------GCCUCCaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 35281 0.69 0.893884
Target:  5'- ---cGGCCGCGGCggCGGAGG-CGaUCa -3'
miRNA:   3'- cuauCUGGCGCUGa-GCCUCCaGC-AGg -5'
9291 5' -55.2 NC_002512.2 + 109040 0.69 0.900166
Target:  5'- --aGGACCGgGgggGCUCGGGGGaCGaCCg -3'
miRNA:   3'- cuaUCUGGCgC---UGAGCCUCCaGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 83823 0.69 0.900166
Target:  5'- ---cGGCgGCGGCUcCGGgcccGGGUCGUCg -3'
miRNA:   3'- cuauCUGgCGCUGA-GCC----UCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 78950 0.69 0.904435
Target:  5'- ---cGGCCGCcggagccuaaguccGGCUCGGAcuuaGcGUCGUCCg -3'
miRNA:   3'- cuauCUGGCG--------------CUGAGCCU----C-CAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.