miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9292 3' -56.2 NC_002512.2 + 185557 0.66 0.951793
Target:  5'- cGCGGCguGGCCgUCGAGggGac-CUGGAa -3'
miRNA:   3'- -UGCUG--UCGG-AGCUCuuCgacGACCUc -5'
9292 3' -56.2 NC_002512.2 + 168129 0.66 0.951793
Target:  5'- -gGGCccGGCCgcggCGAGggGCUGggggUGGGGg -3'
miRNA:   3'- ugCUG--UCGGa---GCUCuuCGACg---ACCUC- -5'
9292 3' -56.2 NC_002512.2 + 72980 0.66 0.947694
Target:  5'- uUGACGGCCUUGGGGAuCUGCggccagcGGGu -3'
miRNA:   3'- uGCUGUCGGAGCUCUUcGACGa------CCUc -5'
9292 3' -56.2 NC_002512.2 + 99385 0.66 0.947694
Target:  5'- cCGcACGGCCUCGcAGcccGGCUGCgacGGAu -3'
miRNA:   3'- uGC-UGUCGGAGC-UCu--UCGACGa--CCUc -5'
9292 3' -56.2 NC_002512.2 + 116522 0.66 0.947694
Target:  5'- uGCGguacACGGCCaaGAcGugccAGCUGCUGGGGa -3'
miRNA:   3'- -UGC----UGUCGGagCU-Cu---UCGACGACCUC- -5'
9292 3' -56.2 NC_002512.2 + 220524 0.66 0.947694
Target:  5'- cCGGgA-CCUgGAGGAGCUGCUGcgcGAGg -3'
miRNA:   3'- uGCUgUcGGAgCUCUUCGACGAC---CUC- -5'
9292 3' -56.2 NC_002512.2 + 222653 0.66 0.94642
Target:  5'- cGCGACGGCCggccgggcCGAGggGCgccucgaguucgacUGCgcccggcacggGGAGg -3'
miRNA:   3'- -UGCUGUCGGa-------GCUCuuCG--------------ACGa----------CCUC- -5'
9292 3' -56.2 NC_002512.2 + 170797 0.66 0.943371
Target:  5'- gACGACGGCggCGAGggGa-GCgacGGGGg -3'
miRNA:   3'- -UGCUGUCGgaGCUCuuCgaCGa--CCUC- -5'
9292 3' -56.2 NC_002512.2 + 121636 0.66 0.943371
Target:  5'- cCGuGCGGCCUCaccaAGAucCUGCUGGGGa -3'
miRNA:   3'- uGC-UGUCGGAGc---UCUucGACGACCUC- -5'
9292 3' -56.2 NC_002512.2 + 4799 0.66 0.943371
Target:  5'- uGCGACGGUUgcugCG-GcAGCUGCUGcGGGa -3'
miRNA:   3'- -UGCUGUCGGa---GCuCuUCGACGAC-CUC- -5'
9292 3' -56.2 NC_002512.2 + 103611 0.66 0.938821
Target:  5'- uCGACGGCCUCcc--GGUaccGCUGGAGg -3'
miRNA:   3'- uGCUGUCGGAGcucuUCGa--CGACCUC- -5'
9292 3' -56.2 NC_002512.2 + 80680 0.66 0.938821
Target:  5'- gGCGGCGGCgaCGGGGgcgAGCgGCguccgGGGGg -3'
miRNA:   3'- -UGCUGUCGgaGCUCU---UCGaCGa----CCUC- -5'
9292 3' -56.2 NC_002512.2 + 130110 0.66 0.938821
Target:  5'- cCG-CGGU--CGAGAGGgaGCUGGAGg -3'
miRNA:   3'- uGCuGUCGgaGCUCUUCgaCGACCUC- -5'
9292 3' -56.2 NC_002512.2 + 195597 0.66 0.938354
Target:  5'- aACGcCAGUcaCUCGGcGggGCggccaccUGCUGGAGa -3'
miRNA:   3'- -UGCuGUCG--GAGCU-CuuCG-------ACGACCUC- -5'
9292 3' -56.2 NC_002512.2 + 4675 0.66 0.938354
Target:  5'- cGCGucgaAGCCcaggaGGGAcugcuggAGCUGCUGGAGc -3'
miRNA:   3'- -UGCug--UCGGag---CUCU-------UCGACGACCUC- -5'
9292 3' -56.2 NC_002512.2 + 4850 0.66 0.934043
Target:  5'- aGCG-CGGCCaucgCGGGGuucgccgcgugcGGCgccgGCUGGAGg -3'
miRNA:   3'- -UGCuGUCGGa---GCUCU------------UCGa---CGACCUC- -5'
9292 3' -56.2 NC_002512.2 + 120778 0.66 0.934043
Target:  5'- uCGGCGGCCgUCGgcGGggGCgGCgGGAc -3'
miRNA:   3'- uGCUGUCGG-AGC--UCuuCGaCGaCCUc -5'
9292 3' -56.2 NC_002512.2 + 27977 0.66 0.934043
Target:  5'- -gGGCGGCCgggCGAGAuuccGGC-GCggGGAGa -3'
miRNA:   3'- ugCUGUCGGa--GCUCU----UCGaCGa-CCUC- -5'
9292 3' -56.2 NC_002512.2 + 212034 0.66 0.934043
Target:  5'- cGCGAgCAccgcGCCcggGAGGAGCUGCUGGc- -3'
miRNA:   3'- -UGCU-GU----CGGag-CUCUUCGACGACCuc -5'
9292 3' -56.2 NC_002512.2 + 115618 0.66 0.934043
Target:  5'- cGCGGCGGacccgCUgGAGAAGgaGgUGGAGc -3'
miRNA:   3'- -UGCUGUCg----GAgCUCUUCgaCgACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.