Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
9292 | 5' | -58.3 | NC_002512.2 | + | 3795 | 0.68 | 0.832224 |
Target: 5'- gGACCGGAGCAguCCCgagaGCGAGccGUCGa -3' miRNA: 3'- -CUGGUCUCGU--GGGaca-CGCUC--CAGCc -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 156819 | 0.68 | 0.790488 |
Target: 5'- -cUCGGucGGCAaCCUGUGCGAGGccugCGGg -3' miRNA: 3'- cuGGUC--UCGUgGGACACGCUCCa---GCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 124258 | 0.68 | 0.790488 |
Target: 5'- cGACaCGGuGCACCCgacgGCGGcGUCGGa -3' miRNA: 3'- -CUG-GUCuCGUGGGaca-CGCUcCAGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 185420 | 0.68 | 0.799126 |
Target: 5'- -cCCGGGGCGCCCUGgaggucuuCGAGGcCGu -3' miRNA: 3'- cuGGUCUCGUGGGACac------GCUCCaGCc -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 145538 | 0.68 | 0.824182 |
Target: 5'- gGGCCGGAGCAUCCcgcuCGAGGacgCGGc -3' miRNA: 3'- -CUGGUCUCGUGGGacacGCUCCa--GCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 83440 | 0.67 | 0.840101 |
Target: 5'- cGGCCugaAGuGCGCCCggacgaagucGUGCGGGG-CGGc -3' miRNA: 3'- -CUGG---UCuCGUGGGa---------CACGCUCCaGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 38929 | 0.67 | 0.854586 |
Target: 5'- gGGCCGccgcggcGGGCGCCCgcGUGCGcccGGGUCuGGu -3' miRNA: 3'- -CUGGU-------CUCGUGGGa-CACGC---UCCAG-CC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 176521 | 0.67 | 0.862671 |
Target: 5'- -uCCGGAGCGuCCUcuaUGUGCgGAGGcucgcUCGGg -3' miRNA: 3'- cuGGUCUCGU-GGG---ACACG-CUCC-----AGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 178811 | 0.67 | 0.876778 |
Target: 5'- cGGCCAGuugguccgacAGCGCCCggacGUGCucGGGUCGc -3' miRNA: 3'- -CUGGUC----------UCGUGGGa---CACGc-UCCAGCc -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 201683 | 0.67 | 0.862671 |
Target: 5'- cGGCgAGGGCGgCCgcgucugGUGCGGGaUCGGc -3' miRNA: 3'- -CUGgUCUCGUgGGa------CACGCUCcAGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 44475 | 0.67 | 0.876778 |
Target: 5'- -uCCAGGGCGCCCcGggGCcGGG-CGGa -3' miRNA: 3'- cuGGUCUCGUGGGaCa-CGcUCCaGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 162130 | 0.67 | 0.862671 |
Target: 5'- cGCCGGAGacgACCCcGgcucGCGAGGcCGGc -3' miRNA: 3'- cUGGUCUCg--UGGGaCa---CGCUCCaGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 186069 | 0.66 | 0.883536 |
Target: 5'- aACCucaAGAGCGCCaUGgucgGCGAgaccGGUCGGc -3' miRNA: 3'- cUGG---UCUCGUGGgACa---CGCU----CCAGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 117067 | 0.66 | 0.914204 |
Target: 5'- uGCCGGAGCACgCgcagGcGCugGAGGUgCGGg -3' miRNA: 3'- cUGGUCUCGUGgGa---CaCG--CUCCA-GCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 118964 | 0.66 | 0.908496 |
Target: 5'- cACCgAGAGCgcgGCCCUG-GUGAcGGUgGGc -3' miRNA: 3'- cUGG-UCUCG---UGGGACaCGCU-CCAgCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 211903 | 0.66 | 0.902572 |
Target: 5'- -uCCGGGGCugCCgcgucGU-CGAGcGUCGGg -3' miRNA: 3'- cuGGUCUCGugGGa----CAcGCUC-CAGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 155606 | 0.66 | 0.886182 |
Target: 5'- gGACCAcGGGgACgugcggcgCCUGUGCGAGGagagccggcggcgcuUCGGc -3' miRNA: 3'- -CUGGU-CUCgUG--------GGACACGCUCC---------------AGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 160763 | 0.66 | 0.883536 |
Target: 5'- gGGCaCGGAGguCCCgGaGCGGGGcCGGc -3' miRNA: 3'- -CUG-GUCUCguGGGaCaCGCUCCaGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 94547 | 0.66 | 0.883536 |
Target: 5'- cGGCCAGcAGCACCCcG-GCGcGGcugacgccgaccUCGGg -3' miRNA: 3'- -CUGGUC-UCGUGGGaCaCGCuCC------------AGCC- -5' |
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9292 | 5' | -58.3 | NC_002512.2 | + | 139960 | 0.66 | 0.913643 |
Target: 5'- uACCGGAGUcgcgccauGCCCUGcaucgucUGCGugGGGUCGc -3' miRNA: 3'- cUGGUCUCG--------UGGGAC-------ACGC--UCCAGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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