Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 9292 | 5' | -58.3 | NC_002512.2 | + | 94547 | 0.66 | 0.883536 |
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Target: 5'- cGGCCAGcAGCACCCcG-GCGcGGcugacgccgaccUCGGg -3' miRNA: 3'- -CUGGUC-UCGUGGGaCaCGCuCC------------AGCC- -5' |
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| 9292 | 5' | -58.3 | NC_002512.2 | + | 160763 | 0.66 | 0.883536 |
|
Target: 5'- gGGCaCGGAGguCCCgGaGCGGGGcCGGc -3' miRNA: 3'- -CUG-GUCUCguGGGaCaCGCUCCaGCC- -5' |
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| 9292 | 5' | -58.3 | NC_002512.2 | + | 155606 | 0.66 | 0.886182 |
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Target: 5'- gGACCAcGGGgACgugcggcgCCUGUGCGAGGagagccggcggcgcuUCGGc -3' miRNA: 3'- -CUGGU-CUCgUG--------GGACACGCUCC---------------AGCC- -5' |
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| 9292 | 5' | -58.3 | NC_002512.2 | + | 211903 | 0.66 | 0.902572 |
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Target: 5'- -uCCGGGGCugCCgcgucGU-CGAGcGUCGGg -3' miRNA: 3'- cuGGUCUCGugGGa----CAcGCUC-CAGCC- -5' |
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| 9292 | 5' | -58.3 | NC_002512.2 | + | 118964 | 0.66 | 0.908496 |
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Target: 5'- cACCgAGAGCgcgGCCCUG-GUGAcGGUgGGc -3' miRNA: 3'- cUGG-UCUCG---UGGGACaCGCU-CCAgCC- -5' |
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| 9292 | 5' | -58.3 | NC_002512.2 | + | 117067 | 0.66 | 0.914204 |
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Target: 5'- uGCCGGAGCACgCgcagGcGCugGAGGUgCGGg -3' miRNA: 3'- cUGGUCUCGUGgGa---CaCG--CUCCA-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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