Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9292 | 5' | -58.3 | NC_002512.2 | + | 123727 | 0.66 | 0.896436 |
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Target: 5'- gGACCu--GUGCUCggaccUGCGGGGUCGGa -3' miRNA: 3'- -CUGGucuCGUGGGac---ACGCUCCAGCC- -5' |
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| 9292 | 5' | -58.3 | NC_002512.2 | + | 211903 | 0.66 | 0.902572 |
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Target: 5'- -uCCGGGGCugCCgcgucGU-CGAGcGUCGGg -3' miRNA: 3'- cuGGUCUCGugGGa----CAcGCUC-CAGCC- -5' |
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| 9292 | 5' | -58.3 | NC_002512.2 | + | 118964 | 0.66 | 0.908496 |
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Target: 5'- cACCgAGAGCgcgGCCCUG-GUGAcGGUgGGc -3' miRNA: 3'- cUGG-UCUCG---UGGGACaCGCU-CCAgCC- -5' |
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| 9292 | 5' | -58.3 | NC_002512.2 | + | 139960 | 0.66 | 0.913643 |
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Target: 5'- uACCGGAGUcgcgccauGCCCUGcaucgucUGCGugGGGUCGc -3' miRNA: 3'- cUGGUCUCG--------UGGGAC-------ACGC--UCCAGCc -5' |
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| 9292 | 5' | -58.3 | NC_002512.2 | + | 117067 | 0.66 | 0.914204 |
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Target: 5'- uGCCGGAGCACgCgcagGcGCugGAGGUgCGGg -3' miRNA: 3'- cUGGUCUCGUGgGa---CaCG--CUCCA-GCC- -5' |
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| 9292 | 5' | -58.3 | NC_002512.2 | + | 131214 | 0.66 | 0.914204 |
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Target: 5'- cGGCCAG-GCGCUCgacGU-CGcGGUCGGa -3' miRNA: 3'- -CUGGUCuCGUGGGa--CAcGCuCCAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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