miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9292 5' -58.3 NC_002512.2 + 124279 0.66 0.889443
Target:  5'- cGGCCGGugccucGGCGCCUgcaUGaUGCuguucaaGAGGUCGGa -3'
miRNA:   3'- -CUGGUC------UCGUGGG---AC-ACG-------CUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 125012 0.72 0.600888
Target:  5'- gGGCCAGGGaCGCCCgcgGgGcCGAGGUCGc -3'
miRNA:   3'- -CUGGUCUC-GUGGGa--CaC-GCUCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 131214 0.66 0.914204
Target:  5'- cGGCCAG-GCGCUCgacGU-CGcGGUCGGa -3'
miRNA:   3'- -CUGGUCuCGUGGGa--CAcGCuCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 131767 0.66 0.883536
Target:  5'- cGACCAGcGC-CCCggcaaGCGGGG-CGGg -3'
miRNA:   3'- -CUGGUCuCGuGGGaca--CGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 132118 0.66 0.890089
Target:  5'- cGGCCGGcAGCGCCCgGUaGCGccGGUUGcGg -3'
miRNA:   3'- -CUGGUC-UCGUGGGaCA-CGCu-CCAGC-C- -5'
9292 5' -58.3 NC_002512.2 + 136571 0.68 0.824182
Target:  5'- uGAUCcGGGUcaGCCCgGUGCGcGGGUUGGa -3'
miRNA:   3'- -CUGGuCUCG--UGGGaCACGC-UCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 137754 0.68 0.790488
Target:  5'- cGCCGcAGCGCCCgcagcGUGUccgcggucugGAGGUCGGc -3'
miRNA:   3'- cUGGUcUCGUGGGa----CACG----------CUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 139960 0.66 0.913643
Target:  5'- uACCGGAGUcgcgccauGCCCUGcaucgucUGCGugGGGUCGc -3'
miRNA:   3'- cUGGUCUCG--------UGGGAC-------ACGC--UCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 145538 0.68 0.824182
Target:  5'- gGGCCGGAGCAUCCcgcuCGAGGacgCGGc -3'
miRNA:   3'- -CUGGUCUCGUGGGacacGCUCCa--GCC- -5'
9292 5' -58.3 NC_002512.2 + 155320 0.68 0.790488
Target:  5'- cACCAGAGCGCCCagGU-CGcGG-CGGa -3'
miRNA:   3'- cUGGUCUCGUGGGa-CAcGCuCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 155606 0.66 0.886182
Target:  5'- gGACCAcGGGgACgugcggcgCCUGUGCGAGGagagccggcggcgcuUCGGc -3'
miRNA:   3'- -CUGGU-CUCgUG--------GGACACGCUCC---------------AGCC- -5'
9292 5' -58.3 NC_002512.2 + 156819 0.68 0.790488
Target:  5'- -cUCGGucGGCAaCCUGUGCGAGGccugCGGg -3'
miRNA:   3'- cuGGUC--UCGUgGGACACGCUCCa---GCC- -5'
9292 5' -58.3 NC_002512.2 + 160763 0.66 0.883536
Target:  5'- gGGCaCGGAGguCCCgGaGCGGGGcCGGc -3'
miRNA:   3'- -CUG-GUCUCguGGGaCaCGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 162130 0.67 0.862671
Target:  5'- cGCCGGAGacgACCCcGgcucGCGAGGcCGGc -3'
miRNA:   3'- cUGGUCUCg--UGGGaCa---CGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 163052 0.69 0.772831
Target:  5'- aACaAGAGCgaaGCCCUGUGCGAGuGgaaaCGGu -3'
miRNA:   3'- cUGgUCUCG---UGGGACACGCUC-Ca---GCC- -5'
9292 5' -58.3 NC_002512.2 + 163407 0.68 0.829829
Target:  5'- uGCCGGGGUugcuguuaACCgguuuauauaucuuCUGUGCGAGG-CGGa -3'
miRNA:   3'- cUGGUCUCG--------UGG--------------GACACGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 176521 0.67 0.862671
Target:  5'- -uCCGGAGCGuCCUcuaUGUGCgGAGGcucgcUCGGg -3'
miRNA:   3'- cuGGUCUCGU-GGG---ACACG-CUCC-----AGCC- -5'
9292 5' -58.3 NC_002512.2 + 178811 0.67 0.876778
Target:  5'- cGGCCAGuugguccgacAGCGCCCggacGUGCucGGGUCGc -3'
miRNA:   3'- -CUGGUC----------UCGUGGGa---CACGc-UCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 185420 0.68 0.799126
Target:  5'- -cCCGGGGCGCCCUGgaggucuuCGAGGcCGu -3'
miRNA:   3'- cuGGUCUCGUGGGACac------GCUCCaGCc -5'
9292 5' -58.3 NC_002512.2 + 186069 0.66 0.883536
Target:  5'- aACCucaAGAGCGCCaUGgucgGCGAgaccGGUCGGc -3'
miRNA:   3'- cUGG---UCUCGUGGgACa---CGCU----CCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.