miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9292 5' -58.3 NC_002512.2 + 86036 1.09 0.002793
Target:  5'- cGACCAGAGCACCCUGUGCGAGGUCGGc -3'
miRNA:   3'- -CUGGUCUCGUGGGACACGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 44475 0.67 0.876778
Target:  5'- -uCCAGGGCGCCCcGggGCcGGG-CGGa -3'
miRNA:   3'- cuGGUCUCGUGGGaCa-CGcUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 124279 0.66 0.889443
Target:  5'- cGGCCGGugccucGGCGCCUgcaUGaUGCuguucaaGAGGUCGGa -3'
miRNA:   3'- -CUGGUC------UCGUGGG---AC-ACG-------CUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 139960 0.66 0.913643
Target:  5'- uACCGGAGUcgcgccauGCCCUGcaucgucUGCGugGGGUCGc -3'
miRNA:   3'- cUGGUCUCG--------UGGGAC-------ACGC--UCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 90118 0.71 0.630185
Target:  5'- gGAUCGcGGGCGCCCgGUgcGCGAGGgccgCGGa -3'
miRNA:   3'- -CUGGU-CUCGUGGGaCA--CGCUCCa---GCC- -5'
9292 5' -58.3 NC_002512.2 + 95256 0.7 0.72682
Target:  5'- -uCCGGAGgGCcgcgcggcuCCUGaacgGCGGGGUCGGg -3'
miRNA:   3'- cuGGUCUCgUG---------GGACa---CGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 7422 0.68 0.790488
Target:  5'- cGACCGcGAGgGCCg-GcGCGAGGUUGGc -3'
miRNA:   3'- -CUGGU-CUCgUGGgaCaCGCUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 137754 0.68 0.790488
Target:  5'- cGCCGcAGCGCCCgcagcGUGUccgcggucugGAGGUCGGc -3'
miRNA:   3'- cUGGUcUCGUGGGa----CACG----------CUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 136571 0.68 0.824182
Target:  5'- uGAUCcGGGUcaGCCCgGUGCGcGGGUUGGa -3'
miRNA:   3'- -CUGGuCUCG--UGGGaCACGC-UCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 176521 0.67 0.862671
Target:  5'- -uCCGGAGCGuCCUcuaUGUGCgGAGGcucgcUCGGg -3'
miRNA:   3'- cuGGUCUCGU-GGG---ACACG-CUCC-----AGCC- -5'
9292 5' -58.3 NC_002512.2 + 3795 0.68 0.832224
Target:  5'- gGACCGGAGCAguCCCgagaGCGAGccGUCGa -3'
miRNA:   3'- -CUGGUCUCGU--GGGaca-CGCUC--CAGCc -5'
9292 5' -58.3 NC_002512.2 + 32567 0.68 0.807625
Target:  5'- cGCCGG-GCGCCgCggGUGcCGGGGUCGu -3'
miRNA:   3'- cUGGUCuCGUGG-Ga-CAC-GCUCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 194638 0.75 0.45137
Target:  5'- uGACaCGGGGCACCC-GUcCGAGGUCGa -3'
miRNA:   3'- -CUG-GUCUCGUGGGaCAcGCUCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 83440 0.67 0.840101
Target:  5'- cGGCCugaAGuGCGCCCggacgaagucGUGCGGGG-CGGc -3'
miRNA:   3'- -CUGG---UCuCGUGGGa---------CACGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 8918 0.73 0.552557
Target:  5'- uGGCCAGGGCGgCCUcgGCcGGGUCGGc -3'
miRNA:   3'- -CUGGUCUCGUgGGAcaCGcUCCAGCC- -5'
9292 5' -58.3 NC_002512.2 + 155320 0.68 0.790488
Target:  5'- cACCAGAGCGCCCagGU-CGcGG-CGGa -3'
miRNA:   3'- cUGGUCUCGUGGGa-CAcGCuCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 38929 0.67 0.854586
Target:  5'- gGGCCGccgcggcGGGCGCCCgcGUGCGcccGGGUCuGGu -3'
miRNA:   3'- -CUGGU-------CUCGUGGGa-CACGC---UCCAG-CC- -5'
9292 5' -58.3 NC_002512.2 + 131767 0.66 0.883536
Target:  5'- cGACCAGcGC-CCCggcaaGCGGGG-CGGg -3'
miRNA:   3'- -CUGGUCuCGuGGGaca--CGCUCCaGCC- -5'
9292 5' -58.3 NC_002512.2 + 125012 0.72 0.600888
Target:  5'- gGGCCAGGGaCGCCCgcgGgGcCGAGGUCGc -3'
miRNA:   3'- -CUGGUCUC-GUGGGa--CaC-GCUCCAGCc -5'
9292 5' -58.3 NC_002512.2 + 4293 0.69 0.733396
Target:  5'- cGGCCAGcuggucgaagacccGGCGCCCcu--CGAGGUCGGc -3'
miRNA:   3'- -CUGGUC--------------UCGUGGGacacGCUCCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.