miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9297 3' -57.4 NC_002512.2 + 115695 0.66 0.929959
Target:  5'- --cUCaugGCCGC-CGGGCCCGacgCCGg -3'
miRNA:   3'- gcuAGaa-CGGCGuGUCCGGGUa--GGCa -5'
9297 3' -57.4 NC_002512.2 + 35749 0.66 0.929959
Target:  5'- gGAUCUucaUGCCGCu--GGCgugcgugaucuCCGUCCGg -3'
miRNA:   3'- gCUAGA---ACGGCGuguCCG-----------GGUAGGCa -5'
9297 3' -57.4 NC_002512.2 + 128358 0.66 0.924835
Target:  5'- uCGGUCUccGUCGCGCGGuGCCCc-CUGUg -3'
miRNA:   3'- -GCUAGAa-CGGCGUGUC-CGGGuaGGCA- -5'
9297 3' -57.4 NC_002512.2 + 64661 0.66 0.924835
Target:  5'- gGAUCacGUCGCGgAGGUCCucgCCGg -3'
miRNA:   3'- gCUAGaaCGGCGUgUCCGGGua-GGCa -5'
9297 3' -57.4 NC_002512.2 + 143838 0.66 0.919487
Target:  5'- aCGAUCUUGCCgaccucGCACAGGgUgcUCUGg -3'
miRNA:   3'- -GCUAGAACGG------CGUGUCCgGguAGGCa -5'
9297 3' -57.4 NC_002512.2 + 189517 0.66 0.919487
Target:  5'- aGAUCUggagaccgaGCgGCGCAGGCCCcgaggggaaucaAUUCGa -3'
miRNA:   3'- gCUAGAa--------CGgCGUGUCCGGG------------UAGGCa -5'
9297 3' -57.4 NC_002512.2 + 108894 0.66 0.919487
Target:  5'- uCGcUC-UGCCGUcgGGGCCCGUUCGc -3'
miRNA:   3'- -GCuAGaACGGCGugUCCGGGUAGGCa -5'
9297 3' -57.4 NC_002512.2 + 130242 0.66 0.919487
Target:  5'- gGAUCggcucgGgCGC-CGGGCCC-UCCGa -3'
miRNA:   3'- gCUAGaa----CgGCGuGUCCGGGuAGGCa -5'
9297 3' -57.4 NC_002512.2 + 150741 0.66 0.919487
Target:  5'- -cGUCggcCCGCGCGcGGCCCAgacCCGUg -3'
miRNA:   3'- gcUAGaacGGCGUGU-CCGGGUa--GGCA- -5'
9297 3' -57.4 NC_002512.2 + 138952 0.66 0.916171
Target:  5'- aCGAcggCggcgGCCGCGCcGGCCCcguucgcggccgccaGUCCGg -3'
miRNA:   3'- -GCUa--Gaa--CGGCGUGuCCGGG---------------UAGGCa -5'
9297 3' -57.4 NC_002512.2 + 82267 0.66 0.913915
Target:  5'- gGAUCgcacGCCaGCgACAGGUCCG-CCGUc -3'
miRNA:   3'- gCUAGaa--CGG-CG-UGUCCGGGUaGGCA- -5'
9297 3' -57.4 NC_002512.2 + 178961 0.66 0.913915
Target:  5'- uGAUCcacGCCGCGgcGGCCCggaaGUCCGa -3'
miRNA:   3'- gCUAGaa-CGGCGUguCCGGG----UAGGCa -5'
9297 3' -57.4 NC_002512.2 + 212830 0.66 0.913915
Target:  5'- ------cGCCGCcgggguugggcGCGGGCgCCGUCCGUc -3'
miRNA:   3'- gcuagaaCGGCG-----------UGUCCG-GGUAGGCA- -5'
9297 3' -57.4 NC_002512.2 + 108579 0.66 0.913346
Target:  5'- cCGAUCUUuuucgggggGCCccggggagcggcgGcCGCGGGCCCGUCCc- -3'
miRNA:   3'- -GCUAGAA---------CGG-------------C-GUGUCCGGGUAGGca -5'
9297 3' -57.4 NC_002512.2 + 134636 0.66 0.902108
Target:  5'- ------aGCCGCGC-GGCCC-UCCGg -3'
miRNA:   3'- gcuagaaCGGCGUGuCCGGGuAGGCa -5'
9297 3' -57.4 NC_002512.2 + 221038 0.67 0.895876
Target:  5'- aCGGgg-UGCCGCccgGCAGcgaGCCCGUCUGg -3'
miRNA:   3'- -GCUagaACGGCG---UGUC---CGGGUAGGCa -5'
9297 3' -57.4 NC_002512.2 + 127553 0.67 0.895876
Target:  5'- aCGcgCUUGUCGUACcggagccGGCCCAgCCGc -3'
miRNA:   3'- -GCuaGAACGGCGUGu------CCGGGUaGGCa -5'
9297 3' -57.4 NC_002512.2 + 45091 0.67 0.895876
Target:  5'- gGGUCUccCCGCGgAGGCCCGggCCa- -3'
miRNA:   3'- gCUAGAacGGCGUgUCCGGGUa-GGca -5'
9297 3' -57.4 NC_002512.2 + 137787 0.67 0.893323
Target:  5'- aGGUCggcgcucggcggGCCGCGCGuccGGCggCCGUCCGUc -3'
miRNA:   3'- gCUAGaa----------CGGCGUGU---CCG--GGUAGGCA- -5'
9297 3' -57.4 NC_002512.2 + 79143 0.67 0.889429
Target:  5'- gGGUCUggGCCGCgcGCGGGCCgacgggaaGUCCa- -3'
miRNA:   3'- gCUAGAa-CGGCG--UGUCCGGg-------UAGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.