miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9297 5' -57.1 NC_002512.2 + 111712 0.66 0.938775
Target:  5'- cGGAuGAcGACGGaGucuCCgGCGGGCAcGGUCg -3'
miRNA:   3'- -CCU-CU-CUGUC-Cu--GGgCGUCCGU-CUAG- -5'
9297 5' -57.1 NC_002512.2 + 3827 0.66 0.938775
Target:  5'- cGGaAGAG-UAGGugCCG-AGGCcgAGGUCg -3'
miRNA:   3'- -CC-UCUCuGUCCugGGCgUCCG--UCUAG- -5'
9297 5' -57.1 NC_002512.2 + 122011 0.66 0.938775
Target:  5'- cGGAGGGGCcGGAg--GC-GGCGGAUCg -3'
miRNA:   3'- -CCUCUCUGuCCUgggCGuCCGUCUAG- -5'
9297 5' -57.1 NC_002512.2 + 57211 0.66 0.938775
Target:  5'- aGGAcgGAGACgAGGGCCgagaCGCGGGCGu--- -3'
miRNA:   3'- -CCU--CUCUG-UCCUGG----GCGUCCGUcuag -5'
9297 5' -57.1 NC_002512.2 + 121924 0.66 0.938775
Target:  5'- gGGAcGAGGCGgcggcggucccGGACCCGC-GGC-GAUg -3'
miRNA:   3'- -CCU-CUCUGU-----------CCUGGGCGuCCGuCUAg -5'
9297 5' -57.1 NC_002512.2 + 52077 0.66 0.938775
Target:  5'- -uGGAGGCGGG--UCGgGGGCAGAUUu -3'
miRNA:   3'- ccUCUCUGUCCugGGCgUCCGUCUAG- -5'
9297 5' -57.1 NC_002512.2 + 91972 0.66 0.938775
Target:  5'- uGGAGgaacAGAucCAGGACCaCGUGGaGgAGAUCg -3'
miRNA:   3'- -CCUC----UCU--GUCCUGG-GCGUC-CgUCUAG- -5'
9297 5' -57.1 NC_002512.2 + 111500 0.66 0.938775
Target:  5'- cGGAGAGuCcGGACguCCGCcGGCGGuagCg -3'
miRNA:   3'- -CCUCUCuGuCCUG--GGCGuCCGUCua-G- -5'
9297 5' -57.1 NC_002512.2 + 210447 0.66 0.938775
Target:  5'- -cGGGGACuGGACCCGUGGauGCGucccGAUCu -3'
miRNA:   3'- ccUCUCUGuCCUGGGCGUC--CGU----CUAG- -5'
9297 5' -57.1 NC_002512.2 + 111922 0.66 0.934057
Target:  5'- cGGccAGGCGGGGagcguCCaCGCAGGCcuGAUCg -3'
miRNA:   3'- -CCucUCUGUCCU-----GG-GCGUCCGu-CUAG- -5'
9297 5' -57.1 NC_002512.2 + 228522 0.66 0.934057
Target:  5'- aGGAGAGACGGaggcgacgagacGACaCgGgAGGCGGAc- -3'
miRNA:   3'- -CCUCUCUGUC------------CUG-GgCgUCCGUCUag -5'
9297 5' -57.1 NC_002512.2 + 153350 0.66 0.934057
Target:  5'- cGGGucGGCGGGuCCCGCuGGGCuGggCg -3'
miRNA:   3'- -CCUcuCUGUCCuGGGCG-UCCGuCuaG- -5'
9297 5' -57.1 NC_002512.2 + 150314 0.66 0.934057
Target:  5'- aGGAgcGAGACcggcggcgAGGACgCCGCGGcGguGAUg -3'
miRNA:   3'- -CCU--CUCUG--------UCCUG-GGCGUC-CguCUAg -5'
9297 5' -57.1 NC_002512.2 + 181021 0.66 0.934057
Target:  5'- -uAGAGGgAGG-CCCGCguccuGGGCAGGa- -3'
miRNA:   3'- ccUCUCUgUCCuGGGCG-----UCCGUCUag -5'
9297 5' -57.1 NC_002512.2 + 53087 0.66 0.934057
Target:  5'- -cAGAGACgcccAGGACCCGUucGCGGGc- -3'
miRNA:   3'- ccUCUCUG----UCCUGGGCGucCGUCUag -5'
9297 5' -57.1 NC_002512.2 + 125594 0.66 0.934057
Target:  5'- uGGGAcGACAGGAagUGCAGGUugaaggcguGGGUCa -3'
miRNA:   3'- cCUCU-CUGUCCUggGCGUCCG---------UCUAG- -5'
9297 5' -57.1 NC_002512.2 + 160694 0.66 0.933573
Target:  5'- gGGGGGGACuucggggGGGACuuGgGGGgGGAcaUCg -3'
miRNA:   3'- -CCUCUCUG-------UCCUGggCgUCCgUCU--AG- -5'
9297 5' -57.1 NC_002512.2 + 91284 0.66 0.931119
Target:  5'- --uGAGACGGuGACCCGCcugaaggaggugucGGCGGcgCa -3'
miRNA:   3'- ccuCUCUGUC-CUGGGCGu-------------CCGUCuaG- -5'
9297 5' -57.1 NC_002512.2 + 26230 0.66 0.931119
Target:  5'- -cGGAGACGGGACCgGUauggacgugcugcugGGGaCAGAg- -3'
miRNA:   3'- ccUCUCUGUCCUGGgCG---------------UCC-GUCUag -5'
9297 5' -57.1 NC_002512.2 + 113230 0.66 0.929116
Target:  5'- cGGGGAGACGGG-CaCgGCAG-CAGGa- -3'
miRNA:   3'- -CCUCUCUGUCCuG-GgCGUCcGUCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.