miRNA display CGI


Results 21 - 40 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9298 3' -58 NC_002512.2 + 20430 0.66 0.929244
Target:  5'- uUCGC-CGgaGCCGAAGAucaGCCgGCCGa -3'
miRNA:   3'- -GGCGuGCagCGGCUUCUug-CGG-CGGU- -5'
9298 3' -58 NC_002512.2 + 13720 0.66 0.929244
Target:  5'- cCCGagaCGCGggaGCCuGAGGGGCGCgaCGCCGg -3'
miRNA:   3'- -GGC---GUGCag-CGG-CUUCUUGCG--GCGGU- -5'
9298 3' -58 NC_002512.2 + 80166 0.66 0.929244
Target:  5'- cUCGC-UGUCGCCGucGu-CGCUGCUg -3'
miRNA:   3'- -GGCGuGCAGCGGCuuCuuGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 47251 0.66 0.929244
Target:  5'- aCGCAgG-CGCUGGAGAagaucGCGaCgGCCAc -3'
miRNA:   3'- gGCGUgCaGCGGCUUCU-----UGC-GgCGGU- -5'
9298 3' -58 NC_002512.2 + 71159 0.66 0.929244
Target:  5'- cCUGguCGUCGaCGAAGAaggacACGUCGuCCAc -3'
miRNA:   3'- -GGCguGCAGCgGCUUCU-----UGCGGC-GGU- -5'
9298 3' -58 NC_002512.2 + 46987 0.66 0.929244
Target:  5'- uUCGCGCc-CGCCGAGaGGgGCCGCUu -3'
miRNA:   3'- -GGCGUGcaGCGGCUUcUUgCGGCGGu -5'
9298 3' -58 NC_002512.2 + 208787 0.66 0.929244
Target:  5'- uCCGCgucugagacgGCgGUCGCCccGGAGCGggaCCGCCGc -3'
miRNA:   3'- -GGCG----------UG-CAGCGGcuUCUUGC---GGCGGU- -5'
9298 3' -58 NC_002512.2 + 150807 0.66 0.929244
Target:  5'- cCCGuCACucacggGUCGCCGugacGAccGCGCCGCg- -3'
miRNA:   3'- -GGC-GUG------CAGCGGCuu--CU--UGCGGCGgu -5'
9298 3' -58 NC_002512.2 + 95952 0.66 0.929244
Target:  5'- aCGCGgGcCGUCGGGc--CGCCGCCGu -3'
miRNA:   3'- gGCGUgCaGCGGCUUcuuGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 220951 0.66 0.929244
Target:  5'- aCGCGCucuucaUCGCCGAcccGGccGAgGCCGCCc -3'
miRNA:   3'- gGCGUGc-----AGCGGCU---UC--UUgCGGCGGu -5'
9298 3' -58 NC_002512.2 + 198032 0.66 0.929244
Target:  5'- aCGCGCG-CGCgaGGGGACGCgGUCGu -3'
miRNA:   3'- gGCGUGCaGCGgcUUCUUGCGgCGGU- -5'
9298 3' -58 NC_002512.2 + 173295 0.66 0.929244
Target:  5'- uCCGCugGaggGCCGucaucGGcuccAACGCCGCCu -3'
miRNA:   3'- -GGCGugCag-CGGCu----UC----UUGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 128119 0.66 0.929244
Target:  5'- cCCGaGgGUuccCGCCGAcGGAGCGCCcggGCCAc -3'
miRNA:   3'- -GGCgUgCA---GCGGCU-UCUUGCGG---CGGU- -5'
9298 3' -58 NC_002512.2 + 126841 0.66 0.929244
Target:  5'- gCGCuCGUCGCgGucGu-CGCCGUCGu -3'
miRNA:   3'- gGCGuGCAGCGgCuuCuuGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 112181 0.66 0.929244
Target:  5'- cCCGCACG-CGCgGAGcAugGCCaCCc -3'
miRNA:   3'- -GGCGUGCaGCGgCUUcUugCGGcGGu -5'
9298 3' -58 NC_002512.2 + 110961 0.66 0.929244
Target:  5'- cUCGCG-GUCGauGAcGAGCaGCCGCCGg -3'
miRNA:   3'- -GGCGUgCAGCggCUuCUUG-CGGCGGU- -5'
9298 3' -58 NC_002512.2 + 99875 0.66 0.929244
Target:  5'- aCCaCGCGgagCGCgGAcacGGGcacgcgGCGCCGCCGg -3'
miRNA:   3'- -GGcGUGCa--GCGgCU---UCU------UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 114122 0.66 0.929244
Target:  5'- aCgGCACGgccacCGguCCGAGGAGCaGCCGgCAg -3'
miRNA:   3'- -GgCGUGCa----GC--GGCUUCUUG-CGGCgGU- -5'
9298 3' -58 NC_002512.2 + 154353 0.66 0.929244
Target:  5'- uCCGcCACGgCGUCGAGGGuGC-CCGUCAa -3'
miRNA:   3'- -GGC-GUGCaGCGGCUUCU-UGcGGCGGU- -5'
9298 3' -58 NC_002512.2 + 24367 0.66 0.927752
Target:  5'- gCUGUAUG-CGCuCGAAGucgucguccuccgcGACGCCGUCGu -3'
miRNA:   3'- -GGCGUGCaGCG-GCUUC--------------UUGCGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.