miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9298 5' -58.1 NC_002512.2 + 100236 0.66 0.907502
Target:  5'- cGUCGACGGGcggcgACCgCGUCCucggagagcGGGagGAg -3'
miRNA:   3'- -CAGCUGCCCa----UGG-GCAGG---------CCCaaCUa -5'
9298 5' -58.1 NC_002512.2 + 124769 0.66 0.901538
Target:  5'- -aCGACGGGUGCgagggcugCCGggacCCGGGgaGAc -3'
miRNA:   3'- caGCUGCCCAUG--------GGCa---GGCCCaaCUa -5'
9298 5' -58.1 NC_002512.2 + 198678 0.66 0.895361
Target:  5'- -gCGACGGGggGCCCGaagUCGGGggGu- -3'
miRNA:   3'- caGCUGCCCa-UGGGCa--GGCCCaaCua -5'
9298 5' -58.1 NC_002512.2 + 100064 0.66 0.888974
Target:  5'- -gCGACGGGgGCCgCGggCCGGGgacgGAg -3'
miRNA:   3'- caGCUGCCCaUGG-GCa-GGCCCaa--CUa -5'
9298 5' -58.1 NC_002512.2 + 134155 0.67 0.88238
Target:  5'- --gGACGGGUACCCGUcgacCCGGa----- -3'
miRNA:   3'- cagCUGCCCAUGGGCA----GGCCcaacua -5'
9298 5' -58.1 NC_002512.2 + 199201 0.67 0.88238
Target:  5'- gGUCGuACGGGUugUCGUCCGaccgcgccgcccGGUaGAUc -3'
miRNA:   3'- -CAGC-UGCCCAugGGCAGGC------------CCAaCUA- -5'
9298 5' -58.1 NC_002512.2 + 101772 0.67 0.875584
Target:  5'- cGUCGGCGGGaACCC--UCGGGagGAg -3'
miRNA:   3'- -CAGCUGCCCaUGGGcaGGCCCaaCUa -5'
9298 5' -58.1 NC_002512.2 + 209082 0.67 0.868588
Target:  5'- uUCGuGCGGGaGCCCGacgUCCGGGUc--- -3'
miRNA:   3'- cAGC-UGCCCaUGGGC---AGGCCCAacua -5'
9298 5' -58.1 NC_002512.2 + 207739 0.67 0.861398
Target:  5'- cGUCGGCGGGggACgC-UCCGGGgugGAg -3'
miRNA:   3'- -CAGCUGCCCa-UGgGcAGGCCCaa-CUa -5'
9298 5' -58.1 NC_002512.2 + 109458 0.67 0.85402
Target:  5'- -aCGGCGGG-ACCUccucuucgGUCCGGG-UGAg -3'
miRNA:   3'- caGCUGCCCaUGGG--------CAGGCCCaACUa -5'
9298 5' -58.1 NC_002512.2 + 124618 0.67 0.846457
Target:  5'- cGUCGGCGGcGUcggcGCCUGgaUCCGGGUg--- -3'
miRNA:   3'- -CAGCUGCC-CA----UGGGC--AGGCCCAacua -5'
9298 5' -58.1 NC_002512.2 + 38937 0.68 0.830805
Target:  5'- -gCGGCGGGcGCCCGcgugcgcCCGGGUcUGGUu -3'
miRNA:   3'- caGCUGCCCaUGGGCa------GGCCCA-ACUA- -5'
9298 5' -58.1 NC_002512.2 + 85189 0.69 0.797575
Target:  5'- -gCGACGGGUcCCCGUgggucgCCGGGUc--- -3'
miRNA:   3'- caGCUGCCCAuGGGCA------GGCCCAacua -5'
9298 5' -58.1 NC_002512.2 + 115269 0.69 0.788907
Target:  5'- -gCGGCGGGgagcGCCUGgCCGGGgUGAUc -3'
miRNA:   3'- caGCUGCCCa---UGGGCaGGCCCaACUA- -5'
9298 5' -58.1 NC_002512.2 + 89435 0.7 0.734467
Target:  5'- cGUCGGCGGGgucaCGUCCGGGcccaUGGa -3'
miRNA:   3'- -CAGCUGCCCauggGCAGGCCCa---ACUa -5'
9298 5' -58.1 NC_002512.2 + 154363 0.71 0.677103
Target:  5'- cGUCGA-GGGUGCCCGUCaacgucgaGGGUa--- -3'
miRNA:   3'- -CAGCUgCCCAUGGGCAGg-------CCCAacua -5'
9298 5' -58.1 NC_002512.2 + 128389 0.72 0.58925
Target:  5'- -aCGACGGGgagagcgACUCGUCCGGGgacgGGg -3'
miRNA:   3'- caGCUGCCCa------UGGGCAGGCCCaa--CUa -5'
9298 5' -58.1 NC_002512.2 + 21183 0.72 0.578576
Target:  5'- gGUCGGCgagccccGGGUACCCGUCCaGGGa---- -3'
miRNA:   3'- -CAGCUG-------CCCAUGGGCAGG-CCCaacua -5'
9298 5' -58.1 NC_002512.2 + 153352 0.74 0.512872
Target:  5'- gGUCGGCGGGU-CCCG-CUGGGcUGGg -3'
miRNA:   3'- -CAGCUGCCCAuGGGCaGGCCCaACUa -5'
9298 5' -58.1 NC_002512.2 + 95737 1.04 0.006135
Target:  5'- gGUCGACGGGUACCCGUCCGGGUUGAUc -3'
miRNA:   3'- -CAGCUGCCCAUGGGCAGGCCCAACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.