miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9300 3' -62.1 NC_002512.2 + 180568 0.66 0.803842
Target:  5'- cGGGCU--CCGGUGGCuCUCuaucaGGGCCGu -3'
miRNA:   3'- cCCUGAguGGCCGCCG-GAG-----CCUGGCu -5'
9300 3' -62.1 NC_002512.2 + 156323 0.66 0.803842
Target:  5'- gGGGAgCUCGUCGaGCGGCUgcgGGACCu- -3'
miRNA:   3'- -CCCU-GAGUGGC-CGCCGGag-CCUGGcu -5'
9300 3' -62.1 NC_002512.2 + 134570 0.66 0.803842
Target:  5'- gGGGACUuCGCCcgccgcugcuucGGC-GCCUCGuccGCCGAc -3'
miRNA:   3'- -CCCUGA-GUGG------------CCGcCGGAGCc--UGGCU- -5'
9300 3' -62.1 NC_002512.2 + 123282 0.66 0.803842
Target:  5'- aGGACauggagCGCCGGCuGGCC-CGGuucGCCa- -3'
miRNA:   3'- cCCUGa-----GUGGCCG-CCGGaGCC---UGGcu -5'
9300 3' -62.1 NC_002512.2 + 34660 0.66 0.803842
Target:  5'- cGGGACaUCGCgGGCGacgaCacaUCGGACaCGAu -3'
miRNA:   3'- -CCCUG-AGUGgCCGCc---Gg--AGCCUG-GCU- -5'
9300 3' -62.1 NC_002512.2 + 56993 0.66 0.803022
Target:  5'- gGGGACa-GCCgugGGCGGCCgggUCGGcggucugACCGGg -3'
miRNA:   3'- -CCCUGagUGG---CCGCCGG---AGCC-------UGGCU- -5'
9300 3' -62.1 NC_002512.2 + 137996 0.66 0.801379
Target:  5'- cGGGccgugcgccgcgccGC-CGCCcgcgccggacGGCGGCCUCGGgggcaugaGCCGGg -3'
miRNA:   3'- -CCC--------------UGaGUGG----------CCGCCGGAGCC--------UGGCU- -5'
9300 3' -62.1 NC_002512.2 + 97183 0.66 0.798904
Target:  5'- aGGAuCUCGCCcacgacgcccgucuGCGGCggCGGGCCGGg -3'
miRNA:   3'- cCCU-GAGUGGc-------------CGCCGgaGCCUGGCU- -5'
9300 3' -62.1 NC_002512.2 + 146103 0.66 0.795587
Target:  5'- cGGucCUCGgCGGCGGCggCGGcGCCGu -3'
miRNA:   3'- -CCcuGAGUgGCCGCCGgaGCC-UGGCu -5'
9300 3' -62.1 NC_002512.2 + 212915 0.66 0.795587
Target:  5'- cGGGAggaacggcaucUUCGauCgGGCGGCC-CGGuCCGAg -3'
miRNA:   3'- -CCCU-----------GAGU--GgCCGCCGGaGCCuGGCU- -5'
9300 3' -62.1 NC_002512.2 + 217353 0.66 0.795587
Target:  5'- cGGGACgCACgaguucagcaUGGCGGCCU-GGugCa- -3'
miRNA:   3'- -CCCUGaGUG----------GCCGCCGGAgCCugGcu -5'
9300 3' -62.1 NC_002512.2 + 184458 0.66 0.787206
Target:  5'- aGGGAgUCGCC-GCGGCCggCGccGCCGu -3'
miRNA:   3'- -CCCUgAGUGGcCGCCGGa-GCc-UGGCu -5'
9300 3' -62.1 NC_002512.2 + 70680 0.66 0.787206
Target:  5'- gGGGACUUcCCGGggacCGGCCgggCGGGggaCGGg -3'
miRNA:   3'- -CCCUGAGuGGCC----GCCGGa--GCCUg--GCU- -5'
9300 3' -62.1 NC_002512.2 + 170416 0.66 0.787206
Target:  5'- -aGACcCGCUGGCgagGGCCUCGGAUa-- -3'
miRNA:   3'- ccCUGaGUGGCCG---CCGGAGCCUGgcu -5'
9300 3' -62.1 NC_002512.2 + 135222 0.66 0.787206
Target:  5'- gGGGGCcCcCCGGCcccgggccGCCUCGaGGCCGu -3'
miRNA:   3'- -CCCUGaGuGGCCGc-------CGGAGC-CUGGCu -5'
9300 3' -62.1 NC_002512.2 + 11570 0.66 0.787206
Target:  5'- aGGGCUacggggaGCaCGaGCGGCCgcccaGGGCCGGg -3'
miRNA:   3'- cCCUGAg------UG-GC-CGCCGGag---CCUGGCU- -5'
9300 3' -62.1 NC_002512.2 + 83157 0.66 0.787206
Target:  5'- cGGGC---CCGGCGGCCgCGGccGCCGc -3'
miRNA:   3'- cCCUGaguGGCCGCCGGaGCC--UGGCu -5'
9300 3' -62.1 NC_002512.2 + 205647 0.66 0.787206
Target:  5'- gGGGACgcCGUCGGCGggcccgacGCCUCGGACa-- -3'
miRNA:   3'- -CCCUGa-GUGGCCGC--------CGGAGCCUGgcu -5'
9300 3' -62.1 NC_002512.2 + 189528 0.66 0.787206
Target:  5'- cGGGCUCGCCGcggucggcguccGCGGCaucugcUGGugCGAc -3'
miRNA:   3'- cCCUGAGUGGC------------CGCCGga----GCCugGCU- -5'
9300 3' -62.1 NC_002512.2 + 182661 0.66 0.787206
Target:  5'- cGGcCUCGCCGaacuccuugauGCGGuUCUgGGGCCGGg -3'
miRNA:   3'- cCCuGAGUGGC-----------CGCC-GGAgCCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.