miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9300 5' -48.1 NC_002512.2 + 227473 0.66 0.999974
Target:  5'- gGCCGGgggcggccgGCCGCGAggaGGUa -3'
miRNA:   3'- gCGGCCaaauuua--UGGCGCUag-CUAg -5'
9300 5' -48.1 NC_002512.2 + 45799 0.66 0.999973
Target:  5'- cCGCCGGgggccGUGCUGCGGUUc--- -3'
miRNA:   3'- -GCGGCCaaauuUAUGGCGCUAGcuag -5'
9300 5' -48.1 NC_002512.2 + 108557 0.66 0.999973
Target:  5'- cCGCCGGagcgAGGUcACCGUGc-CGAUCu -3'
miRNA:   3'- -GCGGCCaaa-UUUA-UGGCGCuaGCUAG- -5'
9300 5' -48.1 NC_002512.2 + 83591 0.66 0.999973
Target:  5'- aCGCCGGUgucGAAgcagucGCCGgGGUUGGa- -3'
miRNA:   3'- -GCGGCCAaa-UUUa-----UGGCgCUAGCUag -5'
9300 5' -48.1 NC_002512.2 + 77046 0.66 0.999973
Target:  5'- cCGCCuGGgg-----ACCGCGAggccCGAUCc -3'
miRNA:   3'- -GCGG-CCaaauuuaUGGCGCUa---GCUAG- -5'
9300 5' -48.1 NC_002512.2 + 99052 0.66 0.999973
Target:  5'- cCGCCGGUacucg-ACCGCGGggUUGGg- -3'
miRNA:   3'- -GCGGCCAaauuuaUGGCGCU--AGCUag -5'
9300 5' -48.1 NC_002512.2 + 151906 0.66 0.999964
Target:  5'- -uCCGGUagGcAUGCCGUcGUCGGUCc -3'
miRNA:   3'- gcGGCCAaaUuUAUGGCGcUAGCUAG- -5'
9300 5' -48.1 NC_002512.2 + 130838 0.66 0.999964
Target:  5'- cCG-CGGUc-GAGUACCGgCGGUCGggCg -3'
miRNA:   3'- -GCgGCCAaaUUUAUGGC-GCUAGCuaG- -5'
9300 5' -48.1 NC_002512.2 + 60893 0.66 0.999962
Target:  5'- aGCCGGcgcgcg-ACCGC--UCGGUCg -3'
miRNA:   3'- gCGGCCaaauuuaUGGCGcuAGCUAG- -5'
9300 5' -48.1 NC_002512.2 + 46683 0.66 0.999952
Target:  5'- --aCGGUcucGGGUGCCGUGA-CGAUCu -3'
miRNA:   3'- gcgGCCAaa-UUUAUGGCGCUaGCUAG- -5'
9300 5' -48.1 NC_002512.2 + 12005 0.66 0.999952
Target:  5'- uGCUGGUUUAaaagacggGAUAUCGuUGAcgCGGUCg -3'
miRNA:   3'- gCGGCCAAAU--------UUAUGGC-GCUa-GCUAG- -5'
9300 5' -48.1 NC_002512.2 + 85333 0.66 0.999952
Target:  5'- uCGCCGGUUgGAGcuuCCGCGcGUCGc-- -3'
miRNA:   3'- -GCGGCCAAaUUUau-GGCGC-UAGCuag -5'
9300 5' -48.1 NC_002512.2 + 116718 0.66 0.999951
Target:  5'- aCGCCGGUcgcgucccgcccgGCCGCGG-CGAg- -3'
miRNA:   3'- -GCGGCCAaauuua-------UGGCGCUaGCUag -5'
9300 5' -48.1 NC_002512.2 + 137364 0.66 0.999937
Target:  5'- gGCCGGg-UAGAU-CCGCG--CGGUCu -3'
miRNA:   3'- gCGGCCaaAUUUAuGGCGCuaGCUAG- -5'
9300 5' -48.1 NC_002512.2 + 88595 0.66 0.999937
Target:  5'- cCGCCGGUgccgccGUGCgCGCGGcCGGcgUCg -3'
miRNA:   3'- -GCGGCCAaauu--UAUG-GCGCUaGCU--AG- -5'
9300 5' -48.1 NC_002512.2 + 225464 0.66 0.999937
Target:  5'- cCGCCGGUcUAccagcaGCCGCcGUCGAc- -3'
miRNA:   3'- -GCGGCCAaAUuua---UGGCGcUAGCUag -5'
9300 5' -48.1 NC_002512.2 + 90628 0.66 0.999928
Target:  5'- gCGCCGGgcggcgcgacccggcGCCGCGGccgCGGUCu -3'
miRNA:   3'- -GCGGCCaaauuua--------UGGCGCUa--GCUAG- -5'
9300 5' -48.1 NC_002512.2 + 78466 0.66 0.999917
Target:  5'- gCGCCGGccgg---ACCGCGAgggCGGa- -3'
miRNA:   3'- -GCGGCCaaauuuaUGGCGCUa--GCUag -5'
9300 5' -48.1 NC_002512.2 + 193891 0.66 0.999917
Target:  5'- aCGCgGGagcGGGUcGCCGCGGUCGGc- -3'
miRNA:   3'- -GCGgCCaaaUUUA-UGGCGCUAGCUag -5'
9300 5' -48.1 NC_002512.2 + 54325 0.66 0.999917
Target:  5'- cCGCCGGUacAAGUcggugACgGUGAucgccUCGAUCg -3'
miRNA:   3'- -GCGGCCAaaUUUA-----UGgCGCU-----AGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.