miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9304 3' -63.9 NC_002512.2 + 130625 0.66 0.698059
Target:  5'- cGGCGCGacagaaggacUCGGUGAcGGCGCCggGg- -3'
miRNA:   3'- cCCGCGC----------AGCCGCUcCCGCGGagCau -5'
9304 3' -63.9 NC_002512.2 + 19772 0.66 0.698059
Target:  5'- cGGGCGCag-GGC-AGGGCGUaCUCGa- -3'
miRNA:   3'- -CCCGCGcagCCGcUCCCGCG-GAGCau -5'
9304 3' -63.9 NC_002512.2 + 37343 0.66 0.698059
Target:  5'- -cGCGCuGUCGGgaaaGAGGGUGaUCUCGUc -3'
miRNA:   3'- ccCGCG-CAGCCg---CUCCCGC-GGAGCAu -5'
9304 3' -63.9 NC_002512.2 + 5246 0.66 0.698059
Target:  5'- cGGGCGCGUaGGcCGAGGcCGCggCGg- -3'
miRNA:   3'- -CCCGCGCAgCC-GCUCCcGCGgaGCau -5'
9304 3' -63.9 NC_002512.2 + 101607 0.66 0.698059
Target:  5'- cGGGCGgcCGUCGGCcc-GGCGCCgggacgCGa- -3'
miRNA:   3'- -CCCGC--GCAGCCGcucCCGCGGa-----GCau -5'
9304 3' -63.9 NC_002512.2 + 207725 0.66 0.698059
Target:  5'- -aGCGCcgaguccaucGUCGGCGGGGGaCGCUcCGg- -3'
miRNA:   3'- ccCGCG----------CAGCCGCUCCC-GCGGaGCau -5'
9304 3' -63.9 NC_002512.2 + 154793 0.66 0.698059
Target:  5'- cGGCGaCGUCGaGCccccGAaacGGCGCCUCGa- -3'
miRNA:   3'- cCCGC-GCAGC-CG----CUc--CCGCGGAGCau -5'
9304 3' -63.9 NC_002512.2 + 85285 0.66 0.688768
Target:  5'- cGGCGCGgaccUCGuGCGAGGGgaucgaCGCCUgccgcucgaCGUAg -3'
miRNA:   3'- cCCGCGC----AGC-CGCUCCC------GCGGA---------GCAU- -5'
9304 3' -63.9 NC_002512.2 + 218912 0.66 0.688768
Target:  5'- gGGGCGgcuCGUgccgcugcccUGGCccGAGGGCGCCggCGUc -3'
miRNA:   3'- -CCCGC---GCA----------GCCG--CUCCCGCGGa-GCAu -5'
9304 3' -63.9 NC_002512.2 + 45264 0.66 0.688768
Target:  5'- cGGC-CGcCGGCG-GGGCGCucgcgCUCGUc -3'
miRNA:   3'- cCCGcGCaGCCGCuCCCGCG-----GAGCAu -5'
9304 3' -63.9 NC_002512.2 + 129099 0.66 0.679437
Target:  5'- -aGCGUGUCGGCGGaGGCGUUcCGg- -3'
miRNA:   3'- ccCGCGCAGCCGCUcCCGCGGaGCau -5'
9304 3' -63.9 NC_002512.2 + 219718 0.66 0.679437
Target:  5'- gGGGCGCGagaGGCGGcccccGUGCCUCGc- -3'
miRNA:   3'- -CCCGCGCag-CCGCUcc---CGCGGAGCau -5'
9304 3' -63.9 NC_002512.2 + 32 0.66 0.679437
Target:  5'- cGGGgGCGUCuugcaaGGgGGGGGgGCUUUGc- -3'
miRNA:   3'- -CCCgCGCAG------CCgCUCCCgCGGAGCau -5'
9304 3' -63.9 NC_002512.2 + 229436 0.66 0.679437
Target:  5'- cGGGgGCGUCuugcaaGGgGGGGGgGCUUUGc- -3'
miRNA:   3'- -CCCgCGCAG------CCgCUCCCgCGGAGCau -5'
9304 3' -63.9 NC_002512.2 + 76094 0.66 0.670073
Target:  5'- cGGCGauCGgaagcugaGGCGGGGGCGCCgggGUGg -3'
miRNA:   3'- cCCGC--GCag------CCGCUCCCGCGGag-CAU- -5'
9304 3' -63.9 NC_002512.2 + 191737 0.66 0.670073
Target:  5'- --cCGCGUCGGUcGGGGUGUC-CGUGg -3'
miRNA:   3'- cccGCGCAGCCGcUCCCGCGGaGCAU- -5'
9304 3' -63.9 NC_002512.2 + 27790 0.66 0.670073
Target:  5'- aGGaCGCgGUCGGaCGAGgugaccGGCGCCcCGUAc -3'
miRNA:   3'- cCC-GCG-CAGCC-GCUC------CCGCGGaGCAU- -5'
9304 3' -63.9 NC_002512.2 + 28075 0.66 0.670073
Target:  5'- cGGGCGCGgcggagaCGGCgGAGaGGuCGCCgcccCGUc -3'
miRNA:   3'- -CCCGCGCa------GCCG-CUC-CC-GCGGa---GCAu -5'
9304 3' -63.9 NC_002512.2 + 81351 0.66 0.667258
Target:  5'- uGGGCGCcucccucgCGGCcGGGGCGggcggcggccgccuCCUCGUc -3'
miRNA:   3'- -CCCGCGca------GCCGcUCCCGC--------------GGAGCAu -5'
9304 3' -63.9 NC_002512.2 + 98330 0.66 0.660683
Target:  5'- gGGGC-CGgggaCGGgGAGGGgggcggccccucCGCCUCGUc -3'
miRNA:   3'- -CCCGcGCa---GCCgCUCCC------------GCGGAGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.