miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9304 5' -53.2 NC_002512.2 + 173270 0.65 0.993809
Target:  5'- cUCUUCGGCGuuccgacgcucaccGUccgcuggaggGCCGUCAUCGGcuCCa -3'
miRNA:   3'- -AGAAGUUGU--------------CG----------CGGCAGUGGCCuuGG- -5'
9304 5' -53.2 NC_002512.2 + 211111 0.66 0.993546
Target:  5'- --cUCAGCAucguguccaaccugcGCGUCGagGCCGaGGACCu -3'
miRNA:   3'- agaAGUUGU---------------CGCGGCagUGGC-CUUGG- -5'
9304 5' -53.2 NC_002512.2 + 137223 0.66 0.993182
Target:  5'- ---cCGGCgcgGGCgGCCGUC-CCGGAuCCg -3'
miRNA:   3'- agaaGUUG---UCG-CGGCAGuGGCCUuGG- -5'
9304 5' -53.2 NC_002512.2 + 123248 0.66 0.993182
Target:  5'- uUCUUCGAgcucgacgacCGGCGCCG-CAugUCGGAggacauggagcGCCg -3'
miRNA:   3'- -AGAAGUU----------GUCGCGGCaGU--GGCCU-----------UGG- -5'
9304 5' -53.2 NC_002512.2 + 12785 0.66 0.993182
Target:  5'- --cUCGGCGGCGCCcccgcugcccCugCGGAugCu -3'
miRNA:   3'- agaAGUUGUCGCGGca--------GugGCCUugG- -5'
9304 5' -53.2 NC_002512.2 + 94563 0.66 0.993182
Target:  5'- --aUCAGCAGguucuUGCCGaUCACCGuGuuGCCg -3'
miRNA:   3'- agaAGUUGUC-----GCGGC-AGUGGC-Cu-UGG- -5'
9304 5' -53.2 NC_002512.2 + 107040 0.66 0.993182
Target:  5'- gUCUUCcagcagGGCGGCGaCCGUCG-CGGccuCCa -3'
miRNA:   3'- -AGAAG------UUGUCGC-GGCAGUgGCCuu-GG- -5'
9304 5' -53.2 NC_002512.2 + 58830 0.66 0.993182
Target:  5'- aUCUUCucgugaagGACGGCGgCGUgcucaCACCcGGAGCa -3'
miRNA:   3'- -AGAAG--------UUGUCGCgGCA-----GUGG-CCUUGg -5'
9304 5' -53.2 NC_002512.2 + 98259 0.66 0.993182
Target:  5'- aCUcCGAgAGCGUcuuCGUgGCCGGGcggGCCg -3'
miRNA:   3'- aGAaGUUgUCGCG---GCAgUGGCCU---UGG- -5'
9304 5' -53.2 NC_002512.2 + 152019 0.66 0.993182
Target:  5'- ---aCGAUuauGUGCuCGUCACCGGAGg- -3'
miRNA:   3'- agaaGUUGu--CGCG-GCAGUGGCCUUgg -5'
9304 5' -53.2 NC_002512.2 + 70236 0.66 0.993182
Target:  5'- --cUCGGugcCGGCGCuCGUCugCGaGAAUCg -3'
miRNA:   3'- agaAGUU---GUCGCG-GCAGugGC-CUUGG- -5'
9304 5' -53.2 NC_002512.2 + 111656 0.66 0.993182
Target:  5'- ----gGACGGUGCCGUC-CCcGAGCa -3'
miRNA:   3'- agaagUUGUCGCGGCAGuGGcCUUGg -5'
9304 5' -53.2 NC_002512.2 + 223805 0.66 0.993182
Target:  5'- --gUCGGCGGCGac--CGCCGGGACg -3'
miRNA:   3'- agaAGUUGUCGCggcaGUGGCCUUGg -5'
9304 5' -53.2 NC_002512.2 + 124271 0.66 0.993182
Target:  5'- ---cCGACGGCGgCGUCGgacCCGGGcgugcggcucgACCg -3'
miRNA:   3'- agaaGUUGUCGCgGCAGU---GGCCU-----------UGG- -5'
9304 5' -53.2 NC_002512.2 + 40317 0.66 0.993182
Target:  5'- aUCUguugCGACGuCGCCGUCGCuCGcGAugUc -3'
miRNA:   3'- -AGAa---GUUGUcGCGGCAGUG-GC-CUugG- -5'
9304 5' -53.2 NC_002512.2 + 13215 0.66 0.993088
Target:  5'- aCUUCGcguacguGCAGCuGcCCGUgCugCGGGACg -3'
miRNA:   3'- aGAAGU-------UGUCG-C-GGCA-GugGCCUUGg -5'
9304 5' -53.2 NC_002512.2 + 214396 0.66 0.992898
Target:  5'- gUCUUCGGcCAcuucgggccggagcGCGCCG-CGCCcGaGGACCg -3'
miRNA:   3'- -AGAAGUU-GU--------------CGCGGCaGUGG-C-CUUGG- -5'
9304 5' -53.2 NC_002512.2 + 117047 0.66 0.992199
Target:  5'- -gUUCgGGCuGCuGCCGUUcguGCCGGAGCa -3'
miRNA:   3'- agAAG-UUGuCG-CGGCAG---UGGCCUUGg -5'
9304 5' -53.2 NC_002512.2 + 113186 0.66 0.992199
Target:  5'- ---cCGGCGuCGCCGUCcgcuccgcgaGCgGGAGCCg -3'
miRNA:   3'- agaaGUUGUcGCGGCAG----------UGgCCUUGG- -5'
9304 5' -53.2 NC_002512.2 + 105593 0.66 0.992199
Target:  5'- cUCUUgAACagcaucaugcaGGCGCCGaggCACCGG--CCg -3'
miRNA:   3'- -AGAAgUUG-----------UCGCGGCa--GUGGCCuuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.