miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9306 3' -61.9 NC_002512.2 + 92513 0.66 0.778624
Target:  5'- cCGCUuccgGGAGACcgcgcggaucuaCCCGGCCgcGGCGgcCGCGg -3'
miRNA:   3'- aGCGA----CUUCUG------------GGGCCGG--UCGC--GCGC- -5'
9306 3' -61.9 NC_002512.2 + 47806 0.66 0.778624
Target:  5'- uUCGCcc-AGACCCCGGagccgCGGCugaggucgGCGCGg -3'
miRNA:   3'- -AGCGacuUCUGGGGCCg----GUCG--------CGCGC- -5'
9306 3' -61.9 NC_002512.2 + 10456 0.66 0.778624
Target:  5'- gCGCgGAGGaggccgccgccGCCCCGGgCgugGGCGuCGCGg -3'
miRNA:   3'- aGCGaCUUC-----------UGGGGCCgG---UCGC-GCGC- -5'
9306 3' -61.9 NC_002512.2 + 127853 0.66 0.778624
Target:  5'- cCGgaGcGGGAUCCC-GUgGGCGCGCGg -3'
miRNA:   3'- aGCgaC-UUCUGGGGcCGgUCGCGCGC- -5'
9306 3' -61.9 NC_002512.2 + 7345 0.66 0.778624
Target:  5'- gUCGCcGuAG-CCCCGGCCcaccgcgacGGCGgcCGCGg -3'
miRNA:   3'- -AGCGaCuUCuGGGGCCGG---------UCGC--GCGC- -5'
9306 3' -61.9 NC_002512.2 + 126488 0.66 0.778624
Target:  5'- gUCGCcc-GGAuCCCCGGCguuGgGCGCGa -3'
miRNA:   3'- -AGCGacuUCU-GGGGCCGgu-CgCGCGC- -5'
9306 3' -61.9 NC_002512.2 + 190187 0.66 0.778624
Target:  5'- cCGCUc---GCCCCGGCUgcagaaggucGGCGgCGCGg -3'
miRNA:   3'- aGCGAcuucUGGGGCCGG----------UCGC-GCGC- -5'
9306 3' -61.9 NC_002512.2 + 137900 0.66 0.778624
Target:  5'- aCGCgGGAGACCCggacgCGGCCcuccGGaCGUGCc -3'
miRNA:   3'- aGCGaCUUCUGGG-----GCCGG----UC-GCGCGc -5'
9306 3' -61.9 NC_002512.2 + 100777 0.66 0.778624
Target:  5'- gUCGCaGAGGACCgCCcGCC-GCGaCGCc -3'
miRNA:   3'- -AGCGaCUUCUGG-GGcCGGuCGC-GCGc -5'
9306 3' -61.9 NC_002512.2 + 10890 0.66 0.777755
Target:  5'- gUGCUGGaggaggcgguugcGGACCCCGGgccggaccucCCAGCcgGCGaCGg -3'
miRNA:   3'- aGCGACU-------------UCUGGGGCC----------GGUCG--CGC-GC- -5'
9306 3' -61.9 NC_002512.2 + 53710 0.66 0.776013
Target:  5'- -aGCUGGAGAagcUgUCGGCCAGguacuucgagcugcUGCGCGa -3'
miRNA:   3'- agCGACUUCU---GgGGCCGGUC--------------GCGCGC- -5'
9306 3' -61.9 NC_002512.2 + 205076 0.66 0.773393
Target:  5'- -gGCUGGAGAgcggcggcgauccguCCUCGGggGGCGCGCc -3'
miRNA:   3'- agCGACUUCU---------------GGGGCCggUCGCGCGc -5'
9306 3' -61.9 NC_002512.2 + 84355 0.66 0.769882
Target:  5'- -aGCgGGAuGCUCCGGCCcGaCGCGCa -3'
miRNA:   3'- agCGaCUUcUGGGGCCGGuC-GCGCGc -5'
9306 3' -61.9 NC_002512.2 + 45908 0.66 0.769882
Target:  5'- -gGCUGuccGCCCCGacaggcgacgacGCCcgAGCGCGCGu -3'
miRNA:   3'- agCGACuucUGGGGC------------CGG--UCGCGCGC- -5'
9306 3' -61.9 NC_002512.2 + 152878 0.66 0.769882
Target:  5'- gUGCgGGAGcgguCCCCGGUCGGUGaacgggaGCGg -3'
miRNA:   3'- aGCGaCUUCu---GGGGCCGGUCGCg------CGC- -5'
9306 3' -61.9 NC_002512.2 + 158852 0.66 0.769882
Target:  5'- -aGCggGggGACgucgucgucgaCCGGCCGGCG-GCGg -3'
miRNA:   3'- agCGa-CuuCUGg----------GGCCGGUCGCgCGC- -5'
9306 3' -61.9 NC_002512.2 + 211729 0.66 0.769882
Target:  5'- -aGCUGu--GCCUCGGCCuGGCcCGCGa -3'
miRNA:   3'- agCGACuucUGGGGCCGG-UCGcGCGC- -5'
9306 3' -61.9 NC_002512.2 + 221893 0.66 0.769882
Target:  5'- cUGCUcccagaucGggGAUCggGcGCCAGCGCGCGa -3'
miRNA:   3'- aGCGA--------CuuCUGGggC-CGGUCGCGCGC- -5'
9306 3' -61.9 NC_002512.2 + 119070 0.66 0.769882
Target:  5'- gCGCUGcuGuCCCuCGaCCGGuCGCGCGa -3'
miRNA:   3'- aGCGACuuCuGGG-GCcGGUC-GCGCGC- -5'
9306 3' -61.9 NC_002512.2 + 127653 0.66 0.769002
Target:  5'- gUCGCUcggacggccggucGAGGGCCgcuCCGGCC-GCG-GCGa -3'
miRNA:   3'- -AGCGA-------------CUUCUGG---GGCCGGuCGCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.