miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9306 5' -55.6 NC_002512.2 + 87718 0.66 0.970775
Target:  5'- uCUCcCGCcGUGUGUCGU-GACCgUGAu -3'
miRNA:   3'- -GAGcGCGuCGCGCAGCAuCUGGaACU- -5'
9306 5' -55.6 NC_002512.2 + 44195 0.66 0.967882
Target:  5'- gUCGCGCAGCGaggCGcagaagAGACCgaagGAc -3'
miRNA:   3'- gAGCGCGUCGCgcaGCa-----UCUGGaa--CU- -5'
9306 5' -55.6 NC_002512.2 + 37663 0.66 0.967882
Target:  5'- uCUCGCG-GGCGaCGUCGaagAGGCCg--- -3'
miRNA:   3'- -GAGCGCgUCGC-GCAGCa--UCUGGaacu -5'
9306 5' -55.6 NC_002512.2 + 152638 0.66 0.964791
Target:  5'- uCUCGCGguGCGCuuuuUCGUGugaauGugCUUGu -3'
miRNA:   3'- -GAGCGCguCGCGc---AGCAU-----CugGAACu -5'
9306 5' -55.6 NC_002512.2 + 104865 0.66 0.964791
Target:  5'- cCUCGCGCAGCGgG-CGgcG-CCg--- -3'
miRNA:   3'- -GAGCGCGUCGCgCaGCauCuGGaacu -5'
9306 5' -55.6 NC_002512.2 + 43930 0.66 0.964791
Target:  5'- cCUCGaGCuccaGGCGC-UCGUAGGCCguccUGAa -3'
miRNA:   3'- -GAGCgCG----UCGCGcAGCAUCUGGa---ACU- -5'
9306 5' -55.6 NC_002512.2 + 42139 0.66 0.964791
Target:  5'- -aCGCaacGCAGCugcuggaugGCGgccUUGUAGGCCUUGAg -3'
miRNA:   3'- gaGCG---CGUCG---------CGC---AGCAUCUGGAACU- -5'
9306 5' -55.6 NC_002512.2 + 75651 0.66 0.964791
Target:  5'- gCUCGCGC-GCGCGUCcuauccuagGUaccuauagGGACCUa-- -3'
miRNA:   3'- -GAGCGCGuCGCGCAG---------CA--------UCUGGAacu -5'
9306 5' -55.6 NC_002512.2 + 123707 0.66 0.964791
Target:  5'- uUgGCGCAGCG-GUUccggGUGGACCUg-- -3'
miRNA:   3'- gAgCGCGUCGCgCAG----CAUCUGGAacu -5'
9306 5' -55.6 NC_002512.2 + 110688 0.66 0.964791
Target:  5'- gCUCGCGCAGC-CGcCGcaGGGCCa--- -3'
miRNA:   3'- -GAGCGCGUCGcGCaGCa-UCUGGaacu -5'
9306 5' -55.6 NC_002512.2 + 94752 0.66 0.964791
Target:  5'- --gGuCGCAG-GCGUCGgugacGACCUUGGa -3'
miRNA:   3'- gagC-GCGUCgCGCAGCau---CUGGAACU- -5'
9306 5' -55.6 NC_002512.2 + 216493 0.66 0.96447
Target:  5'- --gGCGCAGCGCGUCagGUAGcggacgaACCg--- -3'
miRNA:   3'- gagCGCGUCGCGCAG--CAUC-------UGGaacu -5'
9306 5' -55.6 NC_002512.2 + 84546 0.66 0.961497
Target:  5'- gUCGgGCGGCGCGgcgaggCGcucGACCUcGAc -3'
miRNA:   3'- gAGCgCGUCGCGCa-----GCau-CUGGAaCU- -5'
9306 5' -55.6 NC_002512.2 + 134868 0.66 0.961497
Target:  5'- uCUCGgGCGaCGcCGUCGgGGACCUgGAc -3'
miRNA:   3'- -GAGCgCGUcGC-GCAGCaUCUGGAaCU- -5'
9306 5' -55.6 NC_002512.2 + 119031 0.66 0.954281
Target:  5'- -aCGgGcCGGC-CGUCGUGGGCCUg-- -3'
miRNA:   3'- gaGCgC-GUCGcGCAGCAUCUGGAacu -5'
9306 5' -55.6 NC_002512.2 + 201213 0.67 0.939104
Target:  5'- gUCGCGCAgguaguuggccaaccGCGUGUCGcggucgcagUAGugUUUGAu -3'
miRNA:   3'- gAGCGCGU---------------CGCGCAGC---------AUCugGAACU- -5'
9306 5' -55.6 NC_002512.2 + 58986 0.67 0.937239
Target:  5'- --aGCGCAGCGUGUCcaGgcGGCCg--- -3'
miRNA:   3'- gagCGCGUCGCGCAG--CauCUGGaacu -5'
9306 5' -55.6 NC_002512.2 + 73901 0.67 0.93242
Target:  5'- aCUCGCuCAGCGCGgggaCGUacAGGCCg--- -3'
miRNA:   3'- -GAGCGcGUCGCGCa---GCA--UCUGGaacu -5'
9306 5' -55.6 NC_002512.2 + 115640 0.67 0.927374
Target:  5'- cCUCGCGCAGCcggucgcCGUCGaugaGGACCa--- -3'
miRNA:   3'- -GAGCGCGUCGc------GCAGCa---UCUGGaacu -5'
9306 5' -55.6 NC_002512.2 + 45280 0.67 0.927374
Target:  5'- gCUCGCGCucgucucGCGgGUCGgacGGACCg--- -3'
miRNA:   3'- -GAGCGCGu------CGCgCAGCa--UCUGGaacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.