miRNA display CGI


Results 1 - 20 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9307 3' -61.8 NC_002512.2 + 196681 0.66 0.800999
Target:  5'- cGAGGAGUUCGcgCCCauCgGGCgCCuGUu -3'
miRNA:   3'- cCUCCUCGAGCuaGGG--GgCCG-GGuCG- -5'
9307 3' -61.8 NC_002512.2 + 111268 0.66 0.800999
Target:  5'- cGGAcGAGCUUGAugucgacgUCCCgCGGCCagacGCc -3'
miRNA:   3'- -CCUcCUCGAGCU--------AGGGgGCCGGgu--CG- -5'
9307 3' -61.8 NC_002512.2 + 91101 0.66 0.800999
Target:  5'- cGAGGAGgaCGggCCCgUGGCgCUggAGCa -3'
miRNA:   3'- cCUCCUCgaGCuaGGGgGCCG-GG--UCG- -5'
9307 3' -61.8 NC_002512.2 + 205331 0.66 0.800999
Target:  5'- gGGAGGAGCggGAUcucucuccCCUCCGuCCCcGCu -3'
miRNA:   3'- -CCUCCUCGagCUA--------GGGGGCcGGGuCG- -5'
9307 3' -61.8 NC_002512.2 + 96297 0.66 0.800999
Target:  5'- aGGAGGccggcccGCUCGggUCCCCGGC--GGUc -3'
miRNA:   3'- -CCUCCu------CGAGCuaGGGGGCCGggUCG- -5'
9307 3' -61.8 NC_002512.2 + 87856 0.66 0.800999
Target:  5'- cGGcGGGucGC-CGG-CCCCCGGCCgCGGa -3'
miRNA:   3'- -CC-UCCu-CGaGCUaGGGGGCCGG-GUCg -5'
9307 3' -61.8 NC_002512.2 + 200648 0.66 0.800999
Target:  5'- cGGAGGAcggacuGCgCGA-CCCgCGG-CCGGCg -3'
miRNA:   3'- -CCUCCU------CGaGCUaGGGgGCCgGGUCG- -5'
9307 3' -61.8 NC_002512.2 + 77286 0.66 0.800999
Target:  5'- --cGGAGCUCGAaa-CCCGGUUC-GCg -3'
miRNA:   3'- ccuCCUCGAGCUaggGGGCCGGGuCG- -5'
9307 3' -61.8 NC_002512.2 + 102198 0.66 0.800999
Target:  5'- aGGAGGAGaagcgggaGAUCgCCgCGGCCgGaGCg -3'
miRNA:   3'- -CCUCCUCgag-----CUAGgGG-GCCGGgU-CG- -5'
9307 3' -61.8 NC_002512.2 + 108272 0.66 0.800168
Target:  5'- cGGGGAGCUCGAcaucgggUCgUUCGGCUUgaugAGCu -3'
miRNA:   3'- cCUCCUCGAGCU-------AGgGGGCCGGG----UCG- -5'
9307 3' -61.8 NC_002512.2 + 111364 0.66 0.795991
Target:  5'- aGGAcgacccGGGGCUCGAggaagaccucguagCCguCCCGcCCCGGCa -3'
miRNA:   3'- -CCU------CCUCGAGCUa-------------GG--GGGCcGGGUCG- -5'
9307 3' -61.8 NC_002512.2 + 130121 0.66 0.795991
Target:  5'- -aGGGAGCUgGAggCCCgggguggugucgcggCCgcggGGCCCGGCg -3'
miRNA:   3'- ccUCCUCGAgCUa-GGG---------------GG----CCGGGUCG- -5'
9307 3' -61.8 NC_002512.2 + 13822 0.66 0.792626
Target:  5'- aGGAGGAGa--GAggaCCCGGCCCcgaacGCc -3'
miRNA:   3'- -CCUCCUCgagCUaggGGGCCGGGu----CG- -5'
9307 3' -61.8 NC_002512.2 + 94838 0.66 0.792626
Target:  5'- aGGcAGGGGCUguacgcgucagaCGggCCCCCGauCCUGGCg -3'
miRNA:   3'- -CC-UCCUCGA------------GCuaGGGGGCc-GGGUCG- -5'
9307 3' -61.8 NC_002512.2 + 127502 0.66 0.792626
Target:  5'- gGGcGGGAGC---AUCCCCUcGUCCGGCu -3'
miRNA:   3'- -CC-UCCUCGagcUAGGGGGcCGGGUCG- -5'
9307 3' -61.8 NC_002512.2 + 126503 0.66 0.792626
Target:  5'- --cGGAGCgCGAgcgCCUCggCGGCuCCGGCg -3'
miRNA:   3'- ccuCCUCGaGCUa--GGGG--GCCG-GGUCG- -5'
9307 3' -61.8 NC_002512.2 + 92521 0.66 0.792626
Target:  5'- gGGAGaccGCgcgGAUCUaCCCGGCCgCGGCg -3'
miRNA:   3'- -CCUCcu-CGag-CUAGG-GGGCCGG-GUCG- -5'
9307 3' -61.8 NC_002512.2 + 218290 0.66 0.792626
Target:  5'- --cGGc-CUCGGggUCCCCGGCCCugGGCg -3'
miRNA:   3'- ccuCCucGAGCUa-GGGGGCCGGG--UCG- -5'
9307 3' -61.8 NC_002512.2 + 196188 0.66 0.792626
Target:  5'- aGGGGGcgacGGC-CGggUCCCUGGCgagccuCCGGCg -3'
miRNA:   3'- -CCUCC----UCGaGCuaGGGGGCCG------GGUCG- -5'
9307 3' -61.8 NC_002512.2 + 225272 0.66 0.792626
Target:  5'- aGGAGGGcgucCUCGGcguccgUCUCgCGGCCCgcGGCg -3'
miRNA:   3'- -CCUCCUc---GAGCU------AGGGgGCCGGG--UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.