miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9307 5' -53.4 NC_002512.2 + 35281 0.66 0.990103
Target:  5'- cGGCCGcGGCGGcgGAggcgaucaUCUUCAuGUagCg -3'
miRNA:   3'- uCCGGU-CCGCCuaCU--------AGAAGU-CAagG- -5'
9307 5' -53.4 NC_002512.2 + 98277 0.66 0.988778
Target:  5'- uGGCCGGGCGGGccggGcgCUUCucg-CUg -3'
miRNA:   3'- uCCGGUCCGCCUa---CuaGAAGucaaGG- -5'
9307 5' -53.4 NC_002512.2 + 121342 0.66 0.988778
Target:  5'- aAGGCCcGGCGGAccuUCUccgccgUCGGgUCCc -3'
miRNA:   3'- -UCCGGuCCGCCUacuAGA------AGUCaAGG- -5'
9307 5' -53.4 NC_002512.2 + 45077 0.66 0.988778
Target:  5'- cGGCCGGcGCGGAagGGUCUccccgCGGaggCCc -3'
miRNA:   3'- uCCGGUC-CGCCUa-CUAGAa----GUCaa-GG- -5'
9307 5' -53.4 NC_002512.2 + 152466 0.66 0.987318
Target:  5'- aGGGCguguCGGGCGGGUG-UCgaggUUAGgcgCCa -3'
miRNA:   3'- -UCCG----GUCCGCCUACuAGa---AGUCaa-GG- -5'
9307 5' -53.4 NC_002512.2 + 221397 0.66 0.987318
Target:  5'- gGGGCgCGGGCGGG-GAggCggCGGgucugUCCg -3'
miRNA:   3'- -UCCG-GUCCGCCUaCUa-GaaGUCa----AGG- -5'
9307 5' -53.4 NC_002512.2 + 95501 0.66 0.987318
Target:  5'- gAGGCCAGGagagacaGGAcccgcaggcaGAUCgUCAGgUCCg -3'
miRNA:   3'- -UCCGGUCCg------CCUa---------CUAGaAGUCaAGG- -5'
9307 5' -53.4 NC_002512.2 + 174497 0.66 0.987318
Target:  5'- cGGCgGGGCGcuGggGuUCUgcagCAGUUCCc -3'
miRNA:   3'- uCCGgUCCGC--CuaCuAGAa---GUCAAGG- -5'
9307 5' -53.4 NC_002512.2 + 87815 0.66 0.985715
Target:  5'- gAGG-CGGGCGGgcGGUCggaGGggCCg -3'
miRNA:   3'- -UCCgGUCCGCCuaCUAGaagUCaaGG- -5'
9307 5' -53.4 NC_002512.2 + 90461 0.66 0.983963
Target:  5'- cGGGCCAGcuGCGGGUccccGAUCacCGGggcgUCCu -3'
miRNA:   3'- -UCCGGUC--CGCCUA----CUAGaaGUCa---AGG- -5'
9307 5' -53.4 NC_002512.2 + 67880 0.67 0.982052
Target:  5'- cGGCCAGGCGGuccGcAUCccgcacCAGgUCCa -3'
miRNA:   3'- uCCGGUCCGCCua-C-UAGaa----GUCaAGG- -5'
9307 5' -53.4 NC_002512.2 + 111922 0.67 0.977723
Target:  5'- cGGCCAGGCGGGgagcGUCcacgCAGg-CCu -3'
miRNA:   3'- uCCGGUCCGCCUac--UAGaa--GUCaaGG- -5'
9307 5' -53.4 NC_002512.2 + 139801 0.67 0.977723
Target:  5'- cAGGCC-GGCGGggGccUCggUCGGgugUCCa -3'
miRNA:   3'- -UCCGGuCCGCCuaCu-AGa-AGUCa--AGG- -5'
9307 5' -53.4 NC_002512.2 + 156511 0.67 0.975291
Target:  5'- cGGCCuGGGCGGcgGGgcg-CGGgggUCCg -3'
miRNA:   3'- uCCGG-UCCGCCuaCUagaaGUCa--AGG- -5'
9307 5' -53.4 NC_002512.2 + 97215 0.67 0.975291
Target:  5'- cGGGCCGGGCGGGacGUCga-GGcgCUg -3'
miRNA:   3'- -UCCGGUCCGCCUacUAGaagUCaaGG- -5'
9307 5' -53.4 NC_002512.2 + 4446 0.67 0.972671
Target:  5'- gGGuGCCGGGCGcGggGGUCggcgUCGGccCCa -3'
miRNA:   3'- -UC-CGGUCCGC-CuaCUAGa---AGUCaaGG- -5'
9307 5' -53.4 NC_002512.2 + 135027 0.67 0.972671
Target:  5'- cGGGCC-GGCGGAcgGAUCUcgccgCGGccacgcucUUCCu -3'
miRNA:   3'- -UCCGGuCCGCCUa-CUAGAa----GUC--------AAGG- -5'
9307 5' -53.4 NC_002512.2 + 54070 0.67 0.969855
Target:  5'- gAGGUCGGGUGGGUaGAUaacaUUCAG--CCa -3'
miRNA:   3'- -UCCGGUCCGCCUA-CUAg---AAGUCaaGG- -5'
9307 5' -53.4 NC_002512.2 + 152682 0.68 0.966838
Target:  5'- gGGGCC-GGCGGccGGUCUcgUCGcgUCCc -3'
miRNA:   3'- -UCCGGuCCGCCuaCUAGA--AGUcaAGG- -5'
9307 5' -53.4 NC_002512.2 + 32652 0.68 0.966838
Target:  5'- cGGCCAGGCGGuagaugcGGUUgaggCAGUUg- -3'
miRNA:   3'- uCCGGUCCGCCua-----CUAGaa--GUCAAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.