miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9310 3' -54 NC_002512.2 + 188659 0.66 0.990263
Target:  5'- gGCGGCGgcCCgucGUCCGAccGCGgcGGUc -3'
miRNA:   3'- -CGCUGCauGGa--CAGGCUc-UGCauCCA- -5'
9310 3' -54 NC_002512.2 + 92149 0.66 0.990141
Target:  5'- uGCGGCGcgugcaggACCUG-CCGAccaacccGACGgcGGUg -3'
miRNA:   3'- -CGCUGCa-------UGGACaGGCU-------CUGCauCCA- -5'
9310 3' -54 NC_002512.2 + 31697 0.66 0.98898
Target:  5'- -gGACGcggACCUGUUCGccGACGUggAGGUc -3'
miRNA:   3'- cgCUGCa--UGGACAGGCu-CUGCA--UCCA- -5'
9310 3' -54 NC_002512.2 + 204826 0.66 0.98757
Target:  5'- cGCGGCGgcUCcGUCCGGgaggacGACGgcGGUc -3'
miRNA:   3'- -CGCUGCauGGaCAGGCU------CUGCauCCA- -5'
9310 3' -54 NC_002512.2 + 97210 0.66 0.98757
Target:  5'- gGCGGCGgGCCgggcgGgacgUCGAGGCGcUGGGa -3'
miRNA:   3'- -CGCUGCaUGGa----Ca---GGCUCUGC-AUCCa -5'
9310 3' -54 NC_002512.2 + 169313 0.66 0.986658
Target:  5'- aGUGugGgagggGCCUGguauauagugggggCCG-GACGUGGGa -3'
miRNA:   3'- -CGCugCa----UGGACa-------------GGCuCUGCAUCCa -5'
9310 3' -54 NC_002512.2 + 169415 0.66 0.986658
Target:  5'- aGUGugGgagggGCCUGguauauggugggggCCG-GACGUGGGa -3'
miRNA:   3'- -CGCugCa----UGGACa-------------GGCuCUGCAUCCa -5'
9310 3' -54 NC_002512.2 + 27879 0.66 0.986023
Target:  5'- cCGGCcccgccACCUGUCCGAGACGa---- -3'
miRNA:   3'- cGCUGca----UGGACAGGCUCUGCaucca -5'
9310 3' -54 NC_002512.2 + 200337 0.66 0.984333
Target:  5'- cCGGCGUccuCCUGUCgGcGGACGgGGGg -3'
miRNA:   3'- cGCUGCAu--GGACAGgC-UCUGCaUCCa -5'
9310 3' -54 NC_002512.2 + 33346 0.66 0.984333
Target:  5'- aGgGAgcCGcACUUGUCCGAGACGUGcuugcGGa -3'
miRNA:   3'- -CgCU--GCaUGGACAGGCUCUGCAU-----CCa -5'
9310 3' -54 NC_002512.2 + 68253 0.67 0.982493
Target:  5'- uGCGACGgacaaaACCaGuUCCcGGACGUGGGc -3'
miRNA:   3'- -CGCUGCa-----UGGaC-AGGcUCUGCAUCCa -5'
9310 3' -54 NC_002512.2 + 148105 0.67 0.982493
Target:  5'- gGCGGCGgcGCCgaagaCGAGGCGgcGGUg -3'
miRNA:   3'- -CGCUGCa-UGGacag-GCUCUGCauCCA- -5'
9310 3' -54 NC_002512.2 + 4553 0.67 0.982106
Target:  5'- gGCGGCGcgACCgacggcugcggcGUCUGGGGCGgcGGa -3'
miRNA:   3'- -CGCUGCa-UGGa-----------CAGGCUCUGCauCCa -5'
9310 3' -54 NC_002512.2 + 221659 0.67 0.980494
Target:  5'- cGCGACGcucgagGCCUacGUCUGGGACGc-GGa -3'
miRNA:   3'- -CGCUGCa-----UGGA--CAGGCUCUGCauCCa -5'
9310 3' -54 NC_002512.2 + 63101 0.67 0.980494
Target:  5'- -aGaACGU-CCUcGUCCGGGACGggAGGa -3'
miRNA:   3'- cgC-UGCAuGGA-CAGGCUCUGCa-UCCa -5'
9310 3' -54 NC_002512.2 + 85299 0.67 0.980494
Target:  5'- uGCGAgGggaucgacGCCUG-CCGcucGACGUAGGUc -3'
miRNA:   3'- -CGCUgCa-------UGGACaGGCu--CUGCAUCCA- -5'
9310 3' -54 NC_002512.2 + 11671 0.67 0.97833
Target:  5'- cGCGGCccGCCgcgGcCCGAGGCGgGGGc -3'
miRNA:   3'- -CGCUGcaUGGa--CaGGCUCUGCaUCCa -5'
9310 3' -54 NC_002512.2 + 57978 0.67 0.97833
Target:  5'- gGCGACGaACCUaucaccgaGUCCcgGGGACGaGGGg -3'
miRNA:   3'- -CGCUGCaUGGA--------CAGG--CUCUGCaUCCa -5'
9310 3' -54 NC_002512.2 + 217571 0.67 0.97833
Target:  5'- cGCGACGgcgaGCCgGUCCGGcGGCGccgccucggGGGUc -3'
miRNA:   3'- -CGCUGCa---UGGaCAGGCU-CUGCa--------UCCA- -5'
9310 3' -54 NC_002512.2 + 227890 0.67 0.975993
Target:  5'- gGCGACGcggGCgaGUCCGAGGCc--GGa -3'
miRNA:   3'- -CGCUGCa--UGgaCAGGCUCUGcauCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.