miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9310 5' -60.7 NC_002512.2 + 181580 0.66 0.852994
Target:  5'- cCGUCUgCGgcgGCagggGCGGCgGGUCCGCg -3'
miRNA:   3'- aGUAGA-GCag-CGg---CGCUGgCCGGGCG- -5'
9310 5' -60.7 NC_002512.2 + 2258 0.66 0.852994
Target:  5'- cCGUCgccugaccUCGCCGCcGCCG-CCCGCc -3'
miRNA:   3'- aGUAGagc-----AGCGGCGcUGGCcGGGCG- -5'
9310 5' -60.7 NC_002512.2 + 101829 0.66 0.852994
Target:  5'- aUCAcgaCGaCGCCGCGACCgucggGGCCgUGCa -3'
miRNA:   3'- -AGUagaGCaGCGGCGCUGG-----CCGG-GCG- -5'
9310 5' -60.7 NC_002512.2 + 189162 0.66 0.852994
Target:  5'- -uGUCUCGaucgUGUCGCGuuaucaGCCGGCaaGCa -3'
miRNA:   3'- agUAGAGCa---GCGGCGC------UGGCCGggCG- -5'
9310 5' -60.7 NC_002512.2 + 193373 0.66 0.852994
Target:  5'- ---gUUCGUCGCCGCGGgCGGggacgacaCCGa -3'
miRNA:   3'- aguaGAGCAGCGGCGCUgGCCg-------GGCg -5'
9310 5' -60.7 NC_002512.2 + 203950 0.66 0.852994
Target:  5'- ---cCUCGUgGCC-CG-CCGGCCgaCGCa -3'
miRNA:   3'- aguaGAGCAgCGGcGCuGGCCGG--GCG- -5'
9310 5' -60.7 NC_002512.2 + 217635 0.66 0.852994
Target:  5'- -gGUCUCGU-GCUgauGCGGauGGCCUGCu -3'
miRNA:   3'- agUAGAGCAgCGG---CGCUggCCGGGCG- -5'
9310 5' -60.7 NC_002512.2 + 77453 0.66 0.848584
Target:  5'- cCGUCgaaaucgccacgcgCGUCGCCGgGGaucCCGcgcacgcucGCCCGCg -3'
miRNA:   3'- aGUAGa-------------GCAGCGGCgCU---GGC---------CGGGCG- -5'
9310 5' -60.7 NC_002512.2 + 15307 0.66 0.84561
Target:  5'- gCGUCUCGUCGCCcagGCGGgaGGggacgaCGCg -3'
miRNA:   3'- aGUAGAGCAGCGG---CGCUggCCgg----GCG- -5'
9310 5' -60.7 NC_002512.2 + 5174 0.66 0.84561
Target:  5'- -----cCGggGCgGCGGCCGGCCCcaGCa -3'
miRNA:   3'- aguagaGCagCGgCGCUGGCCGGG--CG- -5'
9310 5' -60.7 NC_002512.2 + 152796 0.66 0.84561
Target:  5'- cCGUCUCGgaggucCGCgGCGACggCGGgCgGCg -3'
miRNA:   3'- aGUAGAGCa-----GCGgCGCUG--GCCgGgCG- -5'
9310 5' -60.7 NC_002512.2 + 131261 0.66 0.84561
Target:  5'- cCGUCUCGcUCGUCaCGGCCauCCUGCg -3'
miRNA:   3'- aGUAGAGC-AGCGGcGCUGGccGGGCG- -5'
9310 5' -60.7 NC_002512.2 + 193893 0.66 0.84561
Target:  5'- gCGggagCggGUCGCCGCGGUCGGCggaUCGCg -3'
miRNA:   3'- aGUa---GagCAGCGGCGCUGGCCG---GGCG- -5'
9310 5' -60.7 NC_002512.2 + 111167 0.66 0.84561
Target:  5'- aCAgcaCGUCGCCgGCGAgCGGCagGCg -3'
miRNA:   3'- aGUagaGCAGCGG-CGCUgGCCGggCG- -5'
9310 5' -60.7 NC_002512.2 + 170578 0.66 0.84561
Target:  5'- cUCcUC-CGUCGCCGUGucCCGaCCCGa -3'
miRNA:   3'- -AGuAGaGCAGCGGCGCu-GGCcGGGCg -5'
9310 5' -60.7 NC_002512.2 + 155165 0.66 0.84561
Target:  5'- -gGUCUCGcUCGCuCGCGGCgucgugagcuCGGaggacaCCGCg -3'
miRNA:   3'- agUAGAGC-AGCG-GCGCUG----------GCCg-----GGCG- -5'
9310 5' -60.7 NC_002512.2 + 202045 0.66 0.84561
Target:  5'- cCggCUCGcggucgUGUCGCGAgugcUUGGCCCGCu -3'
miRNA:   3'- aGuaGAGCa-----GCGGCGCU----GGCCGGGCG- -5'
9310 5' -60.7 NC_002512.2 + 136201 0.66 0.84561
Target:  5'- aUCGcgUCGaCGCCgGCGGCCuGGUgCGCg -3'
miRNA:   3'- -AGUagAGCaGCGG-CGCUGG-CCGgGCG- -5'
9310 5' -60.7 NC_002512.2 + 157076 0.66 0.844862
Target:  5'- -gGUCcgggGUCGCCGgcgcccaCGGCgGGCCCGUc -3'
miRNA:   3'- agUAGag--CAGCGGC-------GCUGgCCGGGCG- -5'
9310 5' -60.7 NC_002512.2 + 81411 0.66 0.844862
Target:  5'- --uUCUCGUccuccccgcCGUCGCGGCUccgucccgcggggGGCCCGg -3'
miRNA:   3'- aguAGAGCA---------GCGGCGCUGG-------------CCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.