miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9311 5' -54.6 NC_002512.2 + 134959 0.66 0.982309
Target:  5'- -aCGCUGUUCGccauacuGGCCUcCAUGUg- -3'
miRNA:   3'- cgGCGACAAGCuu-----CCGGGuGUACAgc -5'
9311 5' -54.6 NC_002512.2 + 138261 0.66 0.982309
Target:  5'- cCCGCUGgagauccccgCGggGGCCCuGCAggUGUa- -3'
miRNA:   3'- cGGCGACaa--------GCuuCCGGG-UGU--ACAgc -5'
9311 5' -54.6 NC_002512.2 + 119482 0.66 0.982309
Target:  5'- aGCCGCUGUUCGu-GGUgugCgACAUcUCGc -3'
miRNA:   3'- -CGGCGACAAGCuuCCG---GgUGUAcAGC- -5'
9311 5' -54.6 NC_002512.2 + 110980 0.66 0.981114
Target:  5'- aGCCGCcgGUggacCGAGGccGCCCGCucgaggaagagggugGUGUCGc -3'
miRNA:   3'- -CGGCGa-CAa---GCUUC--CGGGUG---------------UACAGC- -5'
9311 5' -54.6 NC_002512.2 + 113063 0.66 0.980284
Target:  5'- aGCCGCa---CGAGGGCCagGCG-GUCGa -3'
miRNA:   3'- -CGGCGacaaGCUUCCGGg-UGUaCAGC- -5'
9311 5' -54.6 NC_002512.2 + 143802 0.66 0.978092
Target:  5'- cGCCgGCUGUUCucccGGUCCA--UGUCGa -3'
miRNA:   3'- -CGG-CGACAAGcuu-CCGGGUguACAGC- -5'
9311 5' -54.6 NC_002512.2 + 155672 0.66 0.978092
Target:  5'- cCCGCg--UCGGGaccgcGGCCCACGgacGUCGc -3'
miRNA:   3'- cGGCGacaAGCUU-----CCGGGUGUa--CAGC- -5'
9311 5' -54.6 NC_002512.2 + 116168 0.66 0.9774
Target:  5'- aGCCGCUGgcgccgggCGAguuccacgcgcugcGGGCCagGCAggcgGUCGa -3'
miRNA:   3'- -CGGCGACaa------GCU--------------UCCGGg-UGUa---CAGC- -5'
9311 5' -54.6 NC_002512.2 + 100422 0.66 0.975724
Target:  5'- cGUCGUgucGUcCGAGGGCCuCGCAgGUCu -3'
miRNA:   3'- -CGGCGa--CAaGCUUCCGG-GUGUaCAGc -5'
9311 5' -54.6 NC_002512.2 + 211765 0.66 0.975724
Target:  5'- cGCUGCgGgaggacgUGGAGGCCCGgGUGgccgCGg -3'
miRNA:   3'- -CGGCGaCaa-----GCUUCCGGGUgUACa---GC- -5'
9311 5' -54.6 NC_002512.2 + 3493 0.66 0.97291
Target:  5'- cGCCGCcgacuccUGcgUCGcAGGCCCACGcGcCGa -3'
miRNA:   3'- -CGGCG-------ACa-AGCuUCCGGGUGUaCaGC- -5'
9311 5' -54.6 NC_002512.2 + 116974 0.67 0.970437
Target:  5'- aGCUGCUGaUCGAGcuGGUCCGCGacgCGg -3'
miRNA:   3'- -CGGCGACaAGCUU--CCGGGUGUacaGC- -5'
9311 5' -54.6 NC_002512.2 + 212758 0.67 0.970153
Target:  5'- cCCGUUGggagCGGGcucgcucGGCCCugGUGUCc -3'
miRNA:   3'- cGGCGACaa--GCUU-------CCGGGugUACAGc -5'
9311 5' -54.6 NC_002512.2 + 140551 0.67 0.967505
Target:  5'- cGCCGUucugGUccucuaccUCGAAGGUCguCAUGUCc -3'
miRNA:   3'- -CGGCGa---CA--------AGCUUCCGGguGUACAGc -5'
9311 5' -54.6 NC_002512.2 + 3379 0.67 0.964373
Target:  5'- cCCGCUccgCG-GGGCCCACAgGUCc -3'
miRNA:   3'- cGGCGAcaaGCuUCCGGGUGUaCAGc -5'
9311 5' -54.6 NC_002512.2 + 218923 0.67 0.964373
Target:  5'- uGCCGCUGcccuggccCGAGGGCgCCgGCGUccucGUCGa -3'
miRNA:   3'- -CGGCGACaa------GCUUCCG-GG-UGUA----CAGC- -5'
9311 5' -54.6 NC_002512.2 + 167502 0.67 0.964048
Target:  5'- gGCCG-UGUcCGAGGGCgCCAUgcggcucuccgagAUGUCGu -3'
miRNA:   3'- -CGGCgACAaGCUUCCG-GGUG-------------UACAGC- -5'
9311 5' -54.6 NC_002512.2 + 217980 0.67 0.957487
Target:  5'- cGCCGCUuccucggcaGcUUCGggGGCuCCAUcgggAUGUCc -3'
miRNA:   3'- -CGGCGA---------C-AAGCuuCCG-GGUG----UACAGc -5'
9311 5' -54.6 NC_002512.2 + 215690 0.68 0.94291
Target:  5'- gGCUGCccuucugGUUCGggGaccgcaucccgcucuGCCCGCAcGUCGa -3'
miRNA:   3'- -CGGCGa------CAAGCuuC---------------CGGGUGUaCAGC- -5'
9311 5' -54.6 NC_002512.2 + 187312 0.68 0.941112
Target:  5'- cGCCGCUcgccUCGcGGcGCCCGCccGUGUCa -3'
miRNA:   3'- -CGGCGAca--AGCuUC-CGGGUG--UACAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.