miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9313 3' -60.9 NC_002512.2 + 158313 0.66 0.860936
Target:  5'- gCCGCGGUCGucCGGCGcgaGUCCgC-GCu -3'
miRNA:   3'- -GGCGCUAGCc-GCCGCag-CAGGgGuCG- -5'
9313 3' -60.9 NC_002512.2 + 214223 0.66 0.860936
Target:  5'- cCCGgGAcgUCaGGCGGCucGUCGgcucgccgCCCgCGGCc -3'
miRNA:   3'- -GGCgCU--AG-CCGCCG--CAGCa-------GGG-GUCG- -5'
9313 3' -60.9 NC_002512.2 + 169016 0.66 0.860936
Target:  5'- uCgGCGAUCcgGGCGG-G-CGUCCgCgAGCg -3'
miRNA:   3'- -GgCGCUAG--CCGCCgCaGCAGG-GgUCG- -5'
9313 3' -60.9 NC_002512.2 + 150956 0.66 0.860936
Target:  5'- gCCGCGGacUCGGaGGCGggcucgCGUCgCCAu- -3'
miRNA:   3'- -GGCGCU--AGCCgCCGCa-----GCAGgGGUcg -5'
9313 3' -60.9 NC_002512.2 + 89433 0.66 0.860936
Target:  5'- -gGCG-UCGGCGGgGUCacgUCCgGGCc -3'
miRNA:   3'- ggCGCuAGCCGCCgCAGca-GGGgUCG- -5'
9313 3' -60.9 NC_002512.2 + 205641 0.66 0.860936
Target:  5'- cCCGCGGgggacgccgUCGGCGGgccCGacgccUCGgacagCUCCGGCg -3'
miRNA:   3'- -GGCGCU---------AGCCGCC---GC-----AGCa----GGGGUCG- -5'
9313 3' -60.9 NC_002512.2 + 113180 0.66 0.853802
Target:  5'- aCGCGAcCGGCGuCGcCGUCCgCuccGCg -3'
miRNA:   3'- gGCGCUaGCCGCcGCaGCAGGgGu--CG- -5'
9313 3' -60.9 NC_002512.2 + 127906 0.66 0.853802
Target:  5'- aCCGUcgGAUCGGCcacgagcccgccGGCGggcccgCGggCCaCCAGCu -3'
miRNA:   3'- -GGCG--CUAGCCG------------CCGCa-----GCa-GG-GGUCG- -5'
9313 3' -60.9 NC_002512.2 + 155630 0.66 0.853802
Target:  5'- gUGCGAggagagcCGGCGGCGcuUCGgcgUCCGGCc -3'
miRNA:   3'- gGCGCUa------GCCGCCGC--AGCag-GGGUCG- -5'
9313 3' -60.9 NC_002512.2 + 190968 0.66 0.853802
Target:  5'- gCCGCGG-CGGCcccuccGGCGcCGUCgCCgAGa -3'
miRNA:   3'- -GGCGCUaGCCG------CCGCaGCAG-GGgUCg -5'
9313 3' -60.9 NC_002512.2 + 219313 0.66 0.853802
Target:  5'- uCCGCGGccaCGGggagagcguCGGCGUgGcCCgCCGGCu -3'
miRNA:   3'- -GGCGCUa--GCC---------GCCGCAgCaGG-GGUCG- -5'
9313 3' -60.9 NC_002512.2 + 213000 0.66 0.849439
Target:  5'- gCCGCGGccgUCgGGCccggggcccucucgaGGUG-CGUCCgCCGGCu -3'
miRNA:   3'- -GGCGCU---AG-CCG---------------CCGCaGCAGG-GGUCG- -5'
9313 3' -60.9 NC_002512.2 + 169156 0.66 0.849439
Target:  5'- gCCGCGGUC-GCGGUuauacauacuuGUUgaccgugaagugcggGUCCaCCAGCg -3'
miRNA:   3'- -GGCGCUAGcCGCCG-----------CAG---------------CAGG-GGUCG- -5'
9313 3' -60.9 NC_002512.2 + 147636 0.66 0.849439
Target:  5'- aCGaCGA-CGGCGGCGgccgcucccgcuacCGUCaCCGGCc -3'
miRNA:   3'- gGC-GCUaGCCGCCGCa-------------GCAGgGGUCG- -5'
9313 3' -60.9 NC_002512.2 + 228580 0.66 0.846496
Target:  5'- aCCGCGGUCGuGuCGGCGgcaggCG-CCggaCCAGg -3'
miRNA:   3'- -GGCGCUAGC-C-GCCGCa----GCaGG---GGUCg -5'
9313 3' -60.9 NC_002512.2 + 209445 0.66 0.846496
Target:  5'- aCCGUcAUCGGcCGGCugaucuUCGgCUCCGGCg -3'
miRNA:   3'- -GGCGcUAGCC-GCCGc-----AGCaGGGGUCG- -5'
9313 3' -60.9 NC_002512.2 + 119773 0.66 0.846496
Target:  5'- gUCGCGGUCGaCGGCGggga-CCCAGa -3'
miRNA:   3'- -GGCGCUAGCcGCCGCagcagGGGUCg -5'
9313 3' -60.9 NC_002512.2 + 126983 0.66 0.846496
Target:  5'- uCCGCGGUCcucucccaGcGCGG-GUCGUaCCCgGGUc -3'
miRNA:   3'- -GGCGCUAG--------C-CGCCgCAGCA-GGGgUCG- -5'
9313 3' -60.9 NC_002512.2 + 111177 0.66 0.846496
Target:  5'- gCCgGCGAgCGGCaGGCGggGgaagCCCaCGGCg -3'
miRNA:   3'- -GG-CGCUaGCCG-CCGCagCa---GGG-GUCG- -5'
9313 3' -60.9 NC_002512.2 + 184900 0.66 0.846496
Target:  5'- -aGCGggCGGCGGCGcuacugCCCCuucGCc -3'
miRNA:   3'- ggCGCuaGCCGCCGCagca--GGGGu--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.