miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9313 5' -51.2 NC_002512.2 + 92785 0.66 0.998538
Target:  5'- aUCGCaccccGCGCGccuggGCGC-ACACCGGg -3'
miRNA:   3'- -AGCGcuu--UGUGCua---CGCGuUGUGGUC- -5'
9313 5' -51.2 NC_002512.2 + 196168 0.66 0.998538
Target:  5'- gUCGaCGAGGgGCGAgcccgaggGgGCGACgGCCGGg -3'
miRNA:   3'- -AGC-GCUUUgUGCUa-------CgCGUUG-UGGUC- -5'
9313 5' -51.2 NC_002512.2 + 74569 0.66 0.998538
Target:  5'- cCGCGAccugGGCGCucuGGUGCuCGAgGCCGGg -3'
miRNA:   3'- aGCGCU----UUGUG---CUACGcGUUgUGGUC- -5'
9313 5' -51.2 NC_002512.2 + 74724 0.66 0.998538
Target:  5'- gCGCG-AACuCGGUGCGguuaaagAACACCGGc -3'
miRNA:   3'- aGCGCuUUGuGCUACGCg------UUGUGGUC- -5'
9313 5' -51.2 NC_002512.2 + 110961 0.66 0.998538
Target:  5'- cUCGCGGu---CGAUGacgaGCAGcCGCCGGu -3'
miRNA:   3'- -AGCGCUuuguGCUACg---CGUU-GUGGUC- -5'
9313 5' -51.2 NC_002512.2 + 122092 0.66 0.998538
Target:  5'- aCGCGccGGACGCGAggucgGCGCuGACGUCGGc -3'
miRNA:   3'- aGCGC--UUUGUGCUa----CGCG-UUGUGGUC- -5'
9313 5' -51.2 NC_002512.2 + 176631 0.66 0.998538
Target:  5'- gUCG-GggGCucggauCGGUGCuGCAuCACCAGc -3'
miRNA:   3'- -AGCgCuuUGu-----GCUACG-CGUuGUGGUC- -5'
9313 5' -51.2 NC_002512.2 + 179652 0.66 0.998538
Target:  5'- -gGCGAcggcGACGCGcuUGU-CAGCGCCAGg -3'
miRNA:   3'- agCGCU----UUGUGCu-ACGcGUUGUGGUC- -5'
9313 5' -51.2 NC_002512.2 + 182177 0.66 0.998538
Target:  5'- cCGCGAG--GCGgcGCGCAggauggcgaACACCGc -3'
miRNA:   3'- aGCGCUUugUGCuaCGCGU---------UGUGGUc -5'
9313 5' -51.2 NC_002512.2 + 76762 0.66 0.998538
Target:  5'- aUGCGAuagaaaggcuGACACGcgGCGCAuuuauAUACUAa -3'
miRNA:   3'- aGCGCU----------UUGUGCuaCGCGU-----UGUGGUc -5'
9313 5' -51.2 NC_002512.2 + 206086 0.66 0.998538
Target:  5'- cCGCGguGCAgcugcagguuCGGgagGUGgGACACCAGg -3'
miRNA:   3'- aGCGCuuUGU----------GCUa--CGCgUUGUGGUC- -5'
9313 5' -51.2 NC_002512.2 + 192604 0.66 0.99825
Target:  5'- cUGCGgcGCGCGcgGCggGCGACGgCGGc -3'
miRNA:   3'- aGCGCuuUGUGCuaCG--CGUUGUgGUC- -5'
9313 5' -51.2 NC_002512.2 + 131230 0.66 0.99825
Target:  5'- gUCGCGGucggaggcCGCGGUGgccUGCAGCAUCAu -3'
miRNA:   3'- -AGCGCUuu------GUGCUAC---GCGUUGUGGUc -5'
9313 5' -51.2 NC_002512.2 + 228072 0.66 0.99825
Target:  5'- gCGCGGGAgACGAcGgGCuGCACaCGGu -3'
miRNA:   3'- aGCGCUUUgUGCUaCgCGuUGUG-GUC- -5'
9313 5' -51.2 NC_002512.2 + 145933 0.66 0.99825
Target:  5'- cCGcCGGGACuucuuCGAccugcUGCGCGacauGCGCCGGg -3'
miRNA:   3'- aGC-GCUUUGu----GCU-----ACGCGU----UGUGGUC- -5'
9313 5' -51.2 NC_002512.2 + 91702 0.66 0.99825
Target:  5'- aUCGUGGAGC-UGAUGgagaaGCGGgACCGGa -3'
miRNA:   3'- -AGCGCUUUGuGCUACg----CGUUgUGGUC- -5'
9313 5' -51.2 NC_002512.2 + 216649 0.66 0.997915
Target:  5'- aCGCGGAAguCGuccCGCAGCACgGGc -3'
miRNA:   3'- aGCGCUUUguGCuacGCGUUGUGgUC- -5'
9313 5' -51.2 NC_002512.2 + 127732 0.66 0.997915
Target:  5'- aUCGaCGAcccAGCGCGGU-CGCGGCcguagacgGCCAGg -3'
miRNA:   3'- -AGC-GCU---UUGUGCUAcGCGUUG--------UGGUC- -5'
9313 5' -51.2 NC_002512.2 + 90938 0.66 0.997915
Target:  5'- gCGCGAccggGGCguGCGuggGCGCGACgauccACCAGa -3'
miRNA:   3'- aGCGCU----UUG--UGCua-CGCGUUG-----UGGUC- -5'
9313 5' -51.2 NC_002512.2 + 37470 0.66 0.997915
Target:  5'- aCGCGAgaAACugGAagGUGCAagucguuguccGCAUCGGa -3'
miRNA:   3'- aGCGCU--UUGugCUa-CGCGU-----------UGUGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.