miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9317 3' -54 NC_002512.2 + 122416 0.66 0.988014
Target:  5'- gCGGCGAcgaGAUGaa-CAuCGCCACGGACGc -3'
miRNA:   3'- -GCCGCU---CUACagcGU-GUGGUGCUUGU- -5'
9317 3' -54 NC_002512.2 + 164535 0.66 0.988014
Target:  5'- gGGCGGcGAUGaCGCGgGaaGCGGACAu -3'
miRNA:   3'- gCCGCU-CUACaGCGUgUggUGCUUGU- -5'
9317 3' -54 NC_002512.2 + 198023 0.66 0.988014
Target:  5'- gGGCGAGGgacgCGCGCGCgaGgGGACGc -3'
miRNA:   3'- gCCGCUCUaca-GCGUGUGg-UgCUUGU- -5'
9317 3' -54 NC_002512.2 + 93133 0.66 0.986497
Target:  5'- aCGGCGAGGa--CGC-CAUCACGGAg- -3'
miRNA:   3'- -GCCGCUCUacaGCGuGUGGUGCUUgu -5'
9317 3' -54 NC_002512.2 + 113791 0.66 0.986497
Target:  5'- aCGGUGAGGUa--GCGCGCCA--GACAg -3'
miRNA:   3'- -GCCGCUCUAcagCGUGUGGUgcUUGU- -5'
9317 3' -54 NC_002512.2 + 171135 0.66 0.986177
Target:  5'- aCGGCGAGAcgUGUCcgacugaGCGCGCgACGccguuccGACGc -3'
miRNA:   3'- -GCCGCUCU--ACAG-------CGUGUGgUGC-------UUGU- -5'
9317 3' -54 NC_002512.2 + 184646 0.66 0.984837
Target:  5'- aCGGCGAGuccgCGgGCGCCGCGc--- -3'
miRNA:   3'- -GCCGCUCuacaGCgUGUGGUGCuugu -5'
9317 3' -54 NC_002512.2 + 187680 0.66 0.984837
Target:  5'- gCGGCGGGcgGagGCACcgggaACC-CGAACc -3'
miRNA:   3'- -GCCGCUCuaCagCGUG-----UGGuGCUUGu -5'
9317 3' -54 NC_002512.2 + 106916 0.66 0.984837
Target:  5'- aGGCGccc--UCGCGCACCcgcACGAGCGc -3'
miRNA:   3'- gCCGCucuacAGCGUGUGG---UGCUUGU- -5'
9317 3' -54 NC_002512.2 + 124620 0.66 0.981057
Target:  5'- aCGcCGAGAUGUCGCugGCCcuguggccCGAGa- -3'
miRNA:   3'- -GCcGCUCUACAGCGugUGGu-------GCUUgu -5'
9317 3' -54 NC_002512.2 + 150969 0.66 0.981057
Target:  5'- aGGCGGGc--UCGCGuCGCCAUGGugAc -3'
miRNA:   3'- gCCGCUCuacAGCGU-GUGGUGCUugU- -5'
9317 3' -54 NC_002512.2 + 175613 0.67 0.979796
Target:  5'- gGGUGGGGUgccaggGUCGCcgacgccgccgcccuGCGCUGCGGACGu -3'
miRNA:   3'- gCCGCUCUA------CAGCG---------------UGUGGUGCUUGU- -5'
9317 3' -54 NC_002512.2 + 229564 0.67 0.978922
Target:  5'- cCGGCG-GAggagCGCGCGCCGgGAGgGa -3'
miRNA:   3'- -GCCGCuCUaca-GCGUGUGGUgCUUgU- -5'
9317 3' -54 NC_002512.2 + 161 0.67 0.978922
Target:  5'- cCGGCG-GAggagCGCGCGCCGgGAGgGa -3'
miRNA:   3'- -GCCGCuCUaca-GCGUGUGGUgCUUgU- -5'
9317 3' -54 NC_002512.2 + 217445 0.67 0.978699
Target:  5'- uGGcCGAGAaGcccagcucccgccUCGCGCGCgGCGAGCu -3'
miRNA:   3'- gCC-GCUCUaC-------------AGCGUGUGgUGCUUGu -5'
9317 3' -54 NC_002512.2 + 103984 0.67 0.976613
Target:  5'- ---gGAGcUGUCGCGCACCcUGGACGc -3'
miRNA:   3'- gccgCUCuACAGCGUGUGGuGCUUGU- -5'
9317 3' -54 NC_002512.2 + 88569 0.67 0.976613
Target:  5'- gGGCGAGAcguagGUCaGCAUccCCACGAAg- -3'
miRNA:   3'- gCCGCUCUa----CAG-CGUGu-GGUGCUUgu -5'
9317 3' -54 NC_002512.2 + 199545 0.67 0.976613
Target:  5'- uCGGgGAaguuGUGUCGCGCGuCgAUGAACAg -3'
miRNA:   3'- -GCCgCUc---UACAGCGUGU-GgUGCUUGU- -5'
9317 3' -54 NC_002512.2 + 218633 0.67 0.974123
Target:  5'- gCGuCGGGAcccUGUCGCGCcCgGCGGACGg -3'
miRNA:   3'- -GCcGCUCU---ACAGCGUGuGgUGCUUGU- -5'
9317 3' -54 NC_002512.2 + 103575 0.67 0.974123
Target:  5'- uGGgGAGAcGacgccUCGCAgGCCACGAggGCGg -3'
miRNA:   3'- gCCgCUCUaC-----AGCGUgUGGUGCU--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.