miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9317 5' -56.7 NC_002512.2 + 224340 0.66 0.954067
Target:  5'- uUCCGCgGCGccGcgCCGGGGUCgcggGCgGg -3'
miRNA:   3'- -AGGCGgUGCuaCa-GGCUCUAGa---CGgC- -5'
9317 5' -56.7 NC_002512.2 + 198222 0.66 0.951758
Target:  5'- gUCCGCCaccacggccgcgcccGCGccGUCCGGGA-CgGCCu -3'
miRNA:   3'- -AGGCGG---------------UGCuaCAGGCUCUaGaCGGc -5'
9317 5' -56.7 NC_002512.2 + 194616 0.66 0.950177
Target:  5'- gCCGCCGCGGccGUCgccgCGGGGgacCUGCCc -3'
miRNA:   3'- aGGCGGUGCUa-CAG----GCUCUa--GACGGc -5'
9317 5' -56.7 NC_002512.2 + 222647 0.66 0.946072
Target:  5'- cUCCGCCGCGAcGgccggccgggCCGAGGggcGCCu -3'
miRNA:   3'- -AGGCGGUGCUaCa---------GGCUCUagaCGGc -5'
9317 5' -56.7 NC_002512.2 + 4462 0.66 0.946072
Target:  5'- gUCCGCCucaGuUGUCUGAGAUguaCUcGCCa -3'
miRNA:   3'- -AGGCGGug-CuACAGGCUCUA---GA-CGGc -5'
9317 5' -56.7 NC_002512.2 + 145392 0.66 0.941752
Target:  5'- cCCGaCGCGgcGUCCGGGGUCcggGUCu -3'
miRNA:   3'- aGGCgGUGCuaCAGGCUCUAGa--CGGc -5'
9317 5' -56.7 NC_002512.2 + 114127 0.66 0.941752
Target:  5'- aCgGCCACcg-GUCCGAGGagCaGCCGg -3'
miRNA:   3'- aGgCGGUGcuaCAGGCUCUa-GaCGGC- -5'
9317 5' -56.7 NC_002512.2 + 73902 0.66 0.937213
Target:  5'- aUCgGaCCGCGcgGUCCaAGcgCUGUCGg -3'
miRNA:   3'- -AGgC-GGUGCuaCAGGcUCuaGACGGC- -5'
9317 5' -56.7 NC_002512.2 + 120799 0.67 0.934384
Target:  5'- aCgGCCACGGUGUCgacggaccuggcgcgCGGGGacCUGCUGg -3'
miRNA:   3'- aGgCGGUGCUACAG---------------GCUCUa-GACGGC- -5'
9317 5' -56.7 NC_002512.2 + 148824 0.67 0.927475
Target:  5'- cUCGuCCugGGggcgGUCCGGGcgcaccgCUGCCGg -3'
miRNA:   3'- aGGC-GGugCUa---CAGGCUCua-----GACGGC- -5'
9317 5' -56.7 NC_002512.2 + 164757 0.67 0.927475
Target:  5'- gCCGCCAUGGacgCCGAGAUCUuCUu -3'
miRNA:   3'- aGGCGGUGCUacaGGCUCUAGAcGGc -5'
9317 5' -56.7 NC_002512.2 + 183389 0.67 0.927475
Target:  5'- uUCCGCCuCGAca-CCGGGAUCgagaUGCCc -3'
miRNA:   3'- -AGGCGGuGCUacaGGCUCUAG----ACGGc -5'
9317 5' -56.7 NC_002512.2 + 105628 0.67 0.922275
Target:  5'- gCCGUCGuCGGUcUCCGAGAcCcgGCCGa -3'
miRNA:   3'- aGGCGGU-GCUAcAGGCUCUaGa-CGGC- -5'
9317 5' -56.7 NC_002512.2 + 117033 0.67 0.922275
Target:  5'- gCgGCCAuCGAgcUGUUCGGGcugCUGCCGu -3'
miRNA:   3'- aGgCGGU-GCU--ACAGGCUCua-GACGGC- -5'
9317 5' -56.7 NC_002512.2 + 75234 0.67 0.916854
Target:  5'- gCCGUCGCGGUGa-CGAGcgCgGCCGc -3'
miRNA:   3'- aGGCGGUGCUACagGCUCuaGaCGGC- -5'
9317 5' -56.7 NC_002512.2 + 69823 0.67 0.916854
Target:  5'- uUCCGaCCGCGGUGUCUGAcucguuUUUGUCu -3'
miRNA:   3'- -AGGC-GGUGCUACAGGCUcu----AGACGGc -5'
9317 5' -56.7 NC_002512.2 + 135832 0.67 0.911213
Target:  5'- cCCGCCGCGcccGUCgucgccgaaGAGAUCcGCCGc -3'
miRNA:   3'- aGGCGGUGCua-CAGg--------CUCUAGaCGGC- -5'
9317 5' -56.7 NC_002512.2 + 106999 0.67 0.911213
Target:  5'- -aCGCC-CGGg--CCGGGGUCgGCCGa -3'
miRNA:   3'- agGCGGuGCUacaGGCUCUAGaCGGC- -5'
9317 5' -56.7 NC_002512.2 + 123121 0.67 0.911213
Target:  5'- gUCGCCGCGGg--CCGAGA---GCCGg -3'
miRNA:   3'- aGGCGGUGCUacaGGCUCUagaCGGC- -5'
9317 5' -56.7 NC_002512.2 + 97504 0.67 0.911213
Target:  5'- gCgGCCaugGCGGUGUUCGGGAUCgUGgCGu -3'
miRNA:   3'- aGgCGG---UGCUACAGGCUCUAG-ACgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.