miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9320 3' -57.6 NC_002512.2 + 175788 0.67 0.883682
Target:  5'- gUCGCaGGCCgacAGCUUGGcggcguccCGGCGGCUCc -3'
miRNA:   3'- -AGCGcCUGG---UCGAGCUa-------GUCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 131873 0.67 0.883682
Target:  5'- -gGCGGAUCAGgaCGGccacCAGCAcguGCUCg -3'
miRNA:   3'- agCGCCUGGUCgaGCUa---GUCGU---CGAG- -5'
9320 3' -57.6 NC_002512.2 + 217788 0.67 0.883682
Target:  5'- gUCGCGG-CCGGCUggcgGAUCGGCGucGC-Cg -3'
miRNA:   3'- -AGCGCCuGGUCGAg---CUAGUCGU--CGaG- -5'
9320 3' -57.6 NC_002512.2 + 203877 0.67 0.876818
Target:  5'- gUCGCGGACggaAGCUCuccaagGAgacgCAGCuGUUCa -3'
miRNA:   3'- -AGCGCCUGg--UCGAG------CUa---GUCGuCGAG- -5'
9320 3' -57.6 NC_002512.2 + 151026 0.67 0.876818
Target:  5'- aCGCGaGCCAcCUCGAggCGGCGGCcCg -3'
miRNA:   3'- aGCGCcUGGUcGAGCUa-GUCGUCGaG- -5'
9320 3' -57.6 NC_002512.2 + 157162 0.67 0.876818
Target:  5'- -gGCGGGCCgGGCggcgUGggCGGCGGCg- -3'
miRNA:   3'- agCGCCUGG-UCGa---GCuaGUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 91575 0.67 0.869748
Target:  5'- cUCGCGGAUCcGCUaCGAgcgCGcGCGGCa- -3'
miRNA:   3'- -AGCGCCUGGuCGA-GCUa--GU-CGUCGag -5'
9320 3' -57.6 NC_002512.2 + 201994 0.67 0.869748
Target:  5'- aCGCGGugUGGCUCGucUCGGaCAGgUg -3'
miRNA:   3'- aGCGCCugGUCGAGCu-AGUC-GUCgAg -5'
9320 3' -57.6 NC_002512.2 + 204641 0.67 0.860257
Target:  5'- aCGgGGACCGGgaCGGcgacgcgcgggggaUCgccGGCGGCUCg -3'
miRNA:   3'- aGCgCCUGGUCgaGCU--------------AG---UCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 151211 0.67 0.85501
Target:  5'- -aGCGGACUuaGGCUcCGAgcccCGGCgccGGCUCg -3'
miRNA:   3'- agCGCCUGG--UCGA-GCUa---GUCG---UCGAG- -5'
9320 3' -57.6 NC_002512.2 + 155922 0.67 0.85501
Target:  5'- aCGCGuccuCCAGCuUCGGgagCAGCGGCg- -3'
miRNA:   3'- aGCGCcu--GGUCG-AGCUa--GUCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 173802 0.67 0.85501
Target:  5'- cCGCcuuCCAGCUCGAUCuguuGCGgauGCUCu -3'
miRNA:   3'- aGCGccuGGUCGAGCUAGu---CGU---CGAG- -5'
9320 3' -57.6 NC_002512.2 + 9124 0.67 0.847353
Target:  5'- aCGUaGGACCguGGuCUCGGUCaccgAGCAGCUg -3'
miRNA:   3'- aGCG-CCUGG--UC-GAGCUAG----UCGUCGAg -5'
9320 3' -57.6 NC_002512.2 + 182855 0.68 0.839511
Target:  5'- cCGUGcuuccUCAGCUCGccCAGCAGCUCc -3'
miRNA:   3'- aGCGCcu---GGUCGAGCuaGUCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 99640 0.68 0.831492
Target:  5'- cUCGgaGGGCCcggcgcccgAGC-CGAUCcccGGCAGCUCg -3'
miRNA:   3'- -AGCg-CCUGG---------UCGaGCUAG---UCGUCGAG- -5'
9320 3' -57.6 NC_002512.2 + 111265 0.68 0.830681
Target:  5'- aCGCGGACgAGCUUGAugUCGacgucccGCGGC-Ca -3'
miRNA:   3'- aGCGCCUGgUCGAGCU--AGU-------CGUCGaG- -5'
9320 3' -57.6 NC_002512.2 + 133441 0.68 0.823303
Target:  5'- aCGCGGACgGGaUCGAUC-GCGGUa- -3'
miRNA:   3'- aGCGCCUGgUCgAGCUAGuCGUCGag -5'
9320 3' -57.6 NC_002512.2 + 190072 0.68 0.823303
Target:  5'- -aGCuGGCCgcGGC-CGGUCAGCgGGCUCg -3'
miRNA:   3'- agCGcCUGG--UCGaGCUAGUCG-UCGAG- -5'
9320 3' -57.6 NC_002512.2 + 70224 0.68 0.814949
Target:  5'- uUCGUacACCGGCUCGGUgcCGGC-GCUCg -3'
miRNA:   3'- -AGCGccUGGUCGAGCUA--GUCGuCGAG- -5'
9320 3' -57.6 NC_002512.2 + 109849 0.68 0.806439
Target:  5'- gUCGgGGACCGGCgUGG-CGGCGGUg- -3'
miRNA:   3'- -AGCgCCUGGUCGaGCUaGUCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.