miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9320 5' -64.7 NC_002512.2 + 184762 0.67 0.568241
Target:  5'- gGGCgGCCCgUGGUCGucGaCCCCGAGg-- -3'
miRNA:   3'- aCCG-CGGG-GCCAGCu-C-GGGGCUCagc -5'
9320 5' -64.7 NC_002512.2 + 77566 0.68 0.559064
Target:  5'- gGGuCGCCCaCGGgcgucCGAGCCacgCCGAG-CGg -3'
miRNA:   3'- aCC-GCGGG-GCCa----GCUCGG---GGCUCaGC- -5'
9320 5' -64.7 NC_002512.2 + 126509 0.68 0.556319
Target:  5'- gGGCGCgagccUCUGGUCGgacgacccgaccgcGGCCCCGGacucGUCGa -3'
miRNA:   3'- aCCGCG-----GGGCCAGC--------------UCGGGGCU----CAGC- -5'
9320 5' -64.7 NC_002512.2 + 159004 0.68 0.549928
Target:  5'- cGGCgGCCCCGG-CGuccGCgCCGGG-CGg -3'
miRNA:   3'- aCCG-CGGGGCCaGCu--CGgGGCUCaGC- -5'
9320 5' -64.7 NC_002512.2 + 159373 0.68 0.54084
Target:  5'- gGGCGUCCCauucgCGGGUCCCGcggcGUCGg -3'
miRNA:   3'- aCCGCGGGGcca--GCUCGGGGCu---CAGC- -5'
9320 5' -64.7 NC_002512.2 + 143594 0.68 0.54084
Target:  5'- aGGCGCCCuUGcGUgCGGGCCCCc-GUCu -3'
miRNA:   3'- aCCGCGGG-GC-CA-GCUCGGGGcuCAGc -5'
9320 5' -64.7 NC_002512.2 + 173620 0.68 0.54084
Target:  5'- gGaGCGCCUccgccgcggCGG-CGAaCCCCGGGUCGg -3'
miRNA:   3'- aC-CGCGGG---------GCCaGCUcGGGGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 174258 0.68 0.54084
Target:  5'- --uCGCCCgGGUcCGGGUCCCGGGgucUCGg -3'
miRNA:   3'- accGCGGGgCCA-GCUCGGGGCUC---AGC- -5'
9320 5' -64.7 NC_002512.2 + 195351 0.68 0.538123
Target:  5'- cGGCGCCgggaaccccgggugCUGGUCGGcuGCCuggucaccugCCGGGUCGa -3'
miRNA:   3'- aCCGCGG--------------GGCCAGCU--CGG----------GGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 90574 0.68 0.531802
Target:  5'- gGGCgacgGCCCCGGUCuccuucCCCCGGGgCGg -3'
miRNA:   3'- aCCG----CGGGGCCAGcuc---GGGGCUCaGC- -5'
9320 5' -64.7 NC_002512.2 + 211880 0.68 0.529101
Target:  5'- cGGCGCCCUGGagCGGGUCaccuuccggggcugCCGcGUCGu -3'
miRNA:   3'- aCCGCGGGGCCa-GCUCGG--------------GGCuCAGC- -5'
9320 5' -64.7 NC_002512.2 + 96300 0.68 0.513896
Target:  5'- aGGcCGgCCCGcUCGGGuCCCCGgcGGUCGa -3'
miRNA:   3'- aCC-GCgGGGCcAGCUC-GGGGC--UCAGC- -5'
9320 5' -64.7 NC_002512.2 + 219467 0.68 0.513896
Target:  5'- cGGCGacgaCgCGGUCGuGCCCCuggggcGGGUCa -3'
miRNA:   3'- aCCGCg---GgGCCAGCuCGGGG------CUCAGc -5'
9320 5' -64.7 NC_002512.2 + 223302 0.68 0.505035
Target:  5'- aUGGUGCCgCCGGUCGAca-CCGugaacGGUCGg -3'
miRNA:   3'- -ACCGCGG-GGCCAGCUcggGGC-----UCAGC- -5'
9320 5' -64.7 NC_002512.2 + 216733 0.68 0.505035
Target:  5'- aUGGCGCgCaGGUccgCGAGCgCCCG-GUCGa -3'
miRNA:   3'- -ACCGCGgGgCCA---GCUCG-GGGCuCAGC- -5'
9320 5' -64.7 NC_002512.2 + 128014 0.69 0.49624
Target:  5'- aGGCagaacagacccGCCCCGGcgUCGAagagcugcacgGCCCCGAcgGUCGc -3'
miRNA:   3'- aCCG-----------CGGGGCC--AGCU-----------CGGGGCU--CAGC- -5'
9320 5' -64.7 NC_002512.2 + 102902 0.69 0.49624
Target:  5'- cGuGCGCCUggcgCGGUCGAcggccacggGCCCCaGGUCGu -3'
miRNA:   3'- aC-CGCGGG----GCCAGCU---------CGGGGcUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 223992 0.69 0.49624
Target:  5'- cGcGCGCCCCGccGUccaCGAGCgaCGAGUCGg -3'
miRNA:   3'- aC-CGCGGGGC--CA---GCUCGggGCUCAGC- -5'
9320 5' -64.7 NC_002512.2 + 225788 0.69 0.487515
Target:  5'- aGGCuGCgCCGGcCGGGCCgCGGG-CGg -3'
miRNA:   3'- aCCG-CGgGGCCaGCUCGGgGCUCaGC- -5'
9320 5' -64.7 NC_002512.2 + 223211 0.69 0.487515
Target:  5'- cGGCGUCCCGGagCGcGUCCCG-GcCGg -3'
miRNA:   3'- aCCGCGGGGCCa-GCuCGGGGCuCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.