miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9321 3' -54.2 NC_002512.2 + 217105 0.66 0.982361
Target:  5'- gGCAGCGGggGCGC-CG-CCgagUCCuGCg -3'
miRNA:   3'- -UGUCGCUaaCGUGaGCaGGa--AGG-CGa -5'
9321 3' -54.2 NC_002512.2 + 221447 0.66 0.978091
Target:  5'- cGCGGCcGggGCGCggUCGUCCgaccggCCGCg -3'
miRNA:   3'- -UGUCGcUaaCGUG--AGCAGGaa----GGCGa -5'
9321 3' -54.2 NC_002512.2 + 185386 0.66 0.978091
Target:  5'- gGCGGCGGcUGCGaggcCGUCUUcUCCGCc -3'
miRNA:   3'- -UGUCGCUaACGUga--GCAGGA-AGGCGa -5'
9321 3' -54.2 NC_002512.2 + 154140 0.66 0.978091
Target:  5'- -aAGCuauGGUUGUACU-GUCCUUCCGgUa -3'
miRNA:   3'- ugUCG---CUAACGUGAgCAGGAAGGCgA- -5'
9321 3' -54.2 NC_002512.2 + 101774 0.66 0.97569
Target:  5'- uCGGCGAgacgGCGC-CGUCCUcgCgGCg -3'
miRNA:   3'- uGUCGCUaa--CGUGaGCAGGAa-GgCGa -5'
9321 3' -54.2 NC_002512.2 + 94407 0.66 0.97569
Target:  5'- gACGGCGGUcuugGCGCUCcaGUCgg-CCGCg -3'
miRNA:   3'- -UGUCGCUAa---CGUGAG--CAGgaaGGCGa -5'
9321 3' -54.2 NC_002512.2 + 98838 0.67 0.967337
Target:  5'- cCGGCGcg-GCGC-CGUCCUcccCCGCg -3'
miRNA:   3'- uGUCGCuaaCGUGaGCAGGAa--GGCGa -5'
9321 3' -54.2 NC_002512.2 + 112160 0.67 0.964149
Target:  5'- gACGGCGAgccgGCGCUCGagCCcgCaCGCg -3'
miRNA:   3'- -UGUCGCUaa--CGUGAGCa-GGaaG-GCGa -5'
9321 3' -54.2 NC_002512.2 + 200498 0.67 0.962815
Target:  5'- gGCGGCGuccuccgaccgGgGCUCGUCCUcacgCUGCUg -3'
miRNA:   3'- -UGUCGCuaa--------CgUGAGCAGGAa---GGCGA- -5'
9321 3' -54.2 NC_002512.2 + 182256 0.67 0.956759
Target:  5'- gACAGCGAcgGCgccaggacggggaACUgcaCGUCCgUCCGCUc -3'
miRNA:   3'- -UGUCGCUaaCG-------------UGA---GCAGGaAGGCGA- -5'
9321 3' -54.2 NC_002512.2 + 100694 0.67 0.953295
Target:  5'- uGCAGCGcccGCACg-GUCCgggUCUGCUg -3'
miRNA:   3'- -UGUCGCuaaCGUGagCAGGa--AGGCGA- -5'
9321 3' -54.2 NC_002512.2 + 142421 0.68 0.950885
Target:  5'- aACAGCGAcacggUGaCGCUCGUCCcgagaucggauccCCGCa -3'
miRNA:   3'- -UGUCGCUa----AC-GUGAGCAGGaa-----------GGCGa -5'
9321 3' -54.2 NC_002512.2 + 146114 0.69 0.925455
Target:  5'- gGCGGCGGcgGCGC-CGUC-UUCUGCa -3'
miRNA:   3'- -UGUCGCUaaCGUGaGCAGgAAGGCGa -5'
9321 3' -54.2 NC_002512.2 + 188656 0.69 0.895828
Target:  5'- gGCGGCGGcgGCcCgUCGUCCgaCCGCg -3'
miRNA:   3'- -UGUCGCUaaCGuG-AGCAGGaaGGCGa -5'
9321 3' -54.2 NC_002512.2 + 200840 0.7 0.889213
Target:  5'- uCAGCGGggGCGCggcgCGUCuCUgCCGCa -3'
miRNA:   3'- uGUCGCUaaCGUGa---GCAG-GAaGGCGa -5'
9321 3' -54.2 NC_002512.2 + 149867 0.7 0.85905
Target:  5'- aGCAGCGAc-GC-CUCGUCCggcuccggcugCCGCUg -3'
miRNA:   3'- -UGUCGCUaaCGuGAGCAGGaa---------GGCGA- -5'
9321 3' -54.2 NC_002512.2 + 155269 0.71 0.836942
Target:  5'- cGCGGCGGUcucGCGCUCcgcUCCggUCCGCg -3'
miRNA:   3'- -UGUCGCUAa--CGUGAGc--AGGa-AGGCGa -5'
9321 3' -54.2 NC_002512.2 + 106964 0.72 0.794001
Target:  5'- uGCAGCGcucGCGCUCGUCC--CCGUa -3'
miRNA:   3'- -UGUCGCuaaCGUGAGCAGGaaGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.