Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 94407 | 0.66 | 0.97569 |
Target: 5'- gACGGCGGUcuugGCGCUCcaGUCgg-CCGCg -3' miRNA: 3'- -UGUCGCUAa---CGUGAG--CAGgaaGGCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 98838 | 0.67 | 0.967337 |
Target: 5'- cCGGCGcg-GCGC-CGUCCUcccCCGCg -3' miRNA: 3'- uGUCGCuaaCGUGaGCAGGAa--GGCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 100694 | 0.67 | 0.953295 |
Target: 5'- uGCAGCGcccGCACg-GUCCgggUCUGCUg -3' miRNA: 3'- -UGUCGCuaaCGUGagCAGGa--AGGCGA- -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 101774 | 0.66 | 0.97569 |
Target: 5'- uCGGCGAgacgGCGC-CGUCCUcgCgGCg -3' miRNA: 3'- uGUCGCUaa--CGUGaGCAGGAa-GgCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 106964 | 0.72 | 0.794001 |
Target: 5'- uGCAGCGcucGCGCUCGUCC--CCGUa -3' miRNA: 3'- -UGUCGCuaaCGUGAGCAGGaaGGCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 112160 | 0.67 | 0.964149 |
Target: 5'- gACGGCGAgccgGCGCUCGagCCcgCaCGCg -3' miRNA: 3'- -UGUCGCUaa--CGUGAGCa-GGaaG-GCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 142421 | 0.68 | 0.950885 |
Target: 5'- aACAGCGAcacggUGaCGCUCGUCCcgagaucggauccCCGCa -3' miRNA: 3'- -UGUCGCUa----AC-GUGAGCAGGaa-----------GGCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 146114 | 0.69 | 0.925455 |
Target: 5'- gGCGGCGGcgGCGC-CGUC-UUCUGCa -3' miRNA: 3'- -UGUCGCUaaCGUGaGCAGgAAGGCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 149867 | 0.7 | 0.85905 |
Target: 5'- aGCAGCGAc-GC-CUCGUCCggcuccggcugCCGCUg -3' miRNA: 3'- -UGUCGCUaaCGuGAGCAGGaa---------GGCGA- -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 154140 | 0.66 | 0.978091 |
Target: 5'- -aAGCuauGGUUGUACU-GUCCUUCCGgUa -3' miRNA: 3'- ugUCG---CUAACGUGAgCAGGAAGGCgA- -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 155269 | 0.71 | 0.836942 |
Target: 5'- cGCGGCGGUcucGCGCUCcgcUCCggUCCGCg -3' miRNA: 3'- -UGUCGCUAa--CGUGAGc--AGGa-AGGCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 182256 | 0.67 | 0.956759 |
Target: 5'- gACAGCGAcgGCgccaggacggggaACUgcaCGUCCgUCCGCUc -3' miRNA: 3'- -UGUCGCUaaCG-------------UGA---GCAGGaAGGCGA- -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 185386 | 0.66 | 0.978091 |
Target: 5'- gGCGGCGGcUGCGaggcCGUCUUcUCCGCc -3' miRNA: 3'- -UGUCGCUaACGUga--GCAGGA-AGGCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 188656 | 0.69 | 0.895828 |
Target: 5'- gGCGGCGGcgGCcCgUCGUCCgaCCGCg -3' miRNA: 3'- -UGUCGCUaaCGuG-AGCAGGaaGGCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 200498 | 0.67 | 0.962815 |
Target: 5'- gGCGGCGuccuccgaccgGgGCUCGUCCUcacgCUGCUg -3' miRNA: 3'- -UGUCGCuaa--------CgUGAGCAGGAa---GGCGA- -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 200840 | 0.7 | 0.889213 |
Target: 5'- uCAGCGGggGCGCggcgCGUCuCUgCCGCa -3' miRNA: 3'- uGUCGCUaaCGUGa---GCAG-GAaGGCGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 217105 | 0.66 | 0.982361 |
Target: 5'- gGCAGCGGggGCGC-CG-CCgagUCCuGCg -3' miRNA: 3'- -UGUCGCUaaCGUGaGCaGGa--AGG-CGa -5' |
|||||||
9321 | 3' | -54.2 | NC_002512.2 | + | 221447 | 0.66 | 0.978091 |
Target: 5'- cGCGGCcGggGCGCggUCGUCCgaccggCCGCg -3' miRNA: 3'- -UGUCGcUaaCGUG--AGCAGGaa----GGCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home