miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9321 5' -50.1 NC_002512.2 + 44271 0.66 0.999405
Target:  5'- ---uUCGAGauGAGCGuGGUGUuccuGACUCUGg -3'
miRNA:   3'- cuucAGCUU--CUUGC-CCACG----UUGAGAC- -5'
9321 5' -50.1 NC_002512.2 + 223924 0.66 0.999405
Target:  5'- aGAGGUCGAGccGGACGGGgagGuCGAUccCUGg -3'
miRNA:   3'- -CUUCAGCUU--CUUGCCCa--C-GUUGa-GAC- -5'
9321 5' -50.1 NC_002512.2 + 193826 0.66 0.999268
Target:  5'- cGggGUCGgcGAuaaaaguCGGG-GCGuccccGCUCUGc -3'
miRNA:   3'- -CuuCAGCuuCUu------GCCCaCGU-----UGAGAC- -5'
9321 5' -50.1 NC_002512.2 + 168822 0.66 0.999104
Target:  5'- gGAAGUCGAAGGGCaGGcggauCGACUCc- -3'
miRNA:   3'- -CUUCAGCUUCUUGcCCac---GUUGAGac -5'
9321 5' -50.1 NC_002512.2 + 108697 0.66 0.999104
Target:  5'- --uGUCGGccagcgcccGGAACGGGaGCGACcagCUGg -3'
miRNA:   3'- cuuCAGCU---------UCUUGCCCaCGUUGa--GAC- -5'
9321 5' -50.1 NC_002512.2 + 100964 0.66 0.999104
Target:  5'- aGAGGUCGcugucGAGGGCGGGaaagGCGAC-Ca- -3'
miRNA:   3'- -CUUCAGC-----UUCUUGCCCa---CGUUGaGac -5'
9321 5' -50.1 NC_002512.2 + 33038 0.66 0.99891
Target:  5'- cGGGUUG-GGAACgGGGUGUGGCUCc- -3'
miRNA:   3'- cUUCAGCuUCUUG-CCCACGUUGAGac -5'
9321 5' -50.1 NC_002512.2 + 91785 0.66 0.998682
Target:  5'- cAAGUCGAAGAuCGGGcUGgagGACUCg- -3'
miRNA:   3'- cUUCAGCUUCUuGCCC-ACg--UUGAGac -5'
9321 5' -50.1 NC_002512.2 + 155600 0.67 0.997318
Target:  5'- --cGUCGAGGAccACGGGgacgUGCGGCgcCUGu -3'
miRNA:   3'- cuuCAGCUUCU--UGCCC----ACGUUGa-GAC- -5'
9321 5' -50.1 NC_002512.2 + 221603 0.67 0.997133
Target:  5'- gGggGUCGGuggacggcgaggagGGAGCGGGUccacccgGCGGCcCUGc -3'
miRNA:   3'- -CuuCAGCU--------------UCUUGCCCA-------CGUUGaGAC- -5'
9321 5' -50.1 NC_002512.2 + 204913 0.68 0.996285
Target:  5'- -uGGUCGGgugacgGGGACGGGUuCGACUCc- -3'
miRNA:   3'- cuUCAGCU------UCUUGCCCAcGUUGAGac -5'
9321 5' -50.1 NC_002512.2 + 223271 0.68 0.995657
Target:  5'- --cGUCGggGGGCGGGacgccgcgcGCAGCUacaUGg -3'
miRNA:   3'- cuuCAGCuuCUUGCCCa--------CGUUGAg--AC- -5'
9321 5' -50.1 NC_002512.2 + 89330 0.68 0.994141
Target:  5'- cAGGUCGGAGAGCucGUGCAcCUCg- -3'
miRNA:   3'- cUUCAGCUUCUUGccCACGUuGAGac -5'
9321 5' -50.1 NC_002512.2 + 227108 0.68 0.993237
Target:  5'- cGGGUCGGgcucagacgggGGAGCGGGUGCAGa---- -3'
miRNA:   3'- cUUCAGCU-----------UCUUGCCCACGUUgagac -5'
9321 5' -50.1 NC_002512.2 + 181471 0.69 0.98692
Target:  5'- -cGGUCGAAGucCGGGUaGguGCUCa- -3'
miRNA:   3'- cuUCAGCUUCuuGCCCA-CguUGAGac -5'
9321 5' -50.1 NC_002512.2 + 223894 0.7 0.983393
Target:  5'- cGAGGagGAGGAGCGGGaGCGGCg--- -3'
miRNA:   3'- -CUUCagCUUCUUGCCCaCGUUGagac -5'
9321 5' -50.1 NC_002512.2 + 182128 0.71 0.965306
Target:  5'- aGAAGUCGuuGAA-GGcGUGCAGCUCc- -3'
miRNA:   3'- -CUUCAGCuuCUUgCC-CACGUUGAGac -5'
9321 5' -50.1 NC_002512.2 + 176450 0.72 0.958253
Target:  5'- -cGGUCGggGuguCGGGUuccGCGGCUCUc -3'
miRNA:   3'- cuUCAGCuuCuu-GCCCA---CGUUGAGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.