miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9322 3' -62.6 NC_002512.2 + 175769 0.66 0.739001
Target:  5'- gGAacAGCGGGGuGGUCaCGUcgcagGCCGaCAGCu -3'
miRNA:   3'- gCU--UCGUCCC-CCGGcGCA-----CGGC-GUCG- -5'
9322 3' -62.6 NC_002512.2 + 118921 0.66 0.739001
Target:  5'- gGGAGaAGGGGGa--CGUGCUGaCGGCg -3'
miRNA:   3'- gCUUCgUCCCCCggcGCACGGC-GUCG- -5'
9322 3' -62.6 NC_002512.2 + 228803 0.66 0.739001
Target:  5'- aGAGGgAGGGacggggagaccGGCCGCcgGUGCUGCcGUc -3'
miRNA:   3'- gCUUCgUCCC-----------CCGGCG--CACGGCGuCG- -5'
9322 3' -62.6 NC_002512.2 + 113147 0.66 0.739001
Target:  5'- ---cGCGGGGcGCCgGCcucGCCGCGGCc -3'
miRNA:   3'- gcuuCGUCCCcCGG-CGca-CGGCGUCG- -5'
9322 3' -62.6 NC_002512.2 + 191296 0.66 0.729859
Target:  5'- gCGggGCGggggacGGGGGCCGgGa--CGCGGg -3'
miRNA:   3'- -GCuuCGU------CCCCCGGCgCacgGCGUCg -5'
9322 3' -62.6 NC_002512.2 + 166211 0.66 0.729859
Target:  5'- gGcGGCgAGGaGGGCCGCGcGCgCGUGGg -3'
miRNA:   3'- gCuUCG-UCC-CCCGGCGCaCG-GCGUCg -5'
9322 3' -62.6 NC_002512.2 + 175186 0.66 0.72894
Target:  5'- --cGGCGGGGGGUucucccgCGCGUucaucGCCGCGu- -3'
miRNA:   3'- gcuUCGUCCCCCG-------GCGCA-----CGGCGUcg -5'
9322 3' -62.6 NC_002512.2 + 158284 0.66 0.715081
Target:  5'- uGAAGCuggAGGGcgugccggcccccaaGGCCGCG-GUCGUccGGCg -3'
miRNA:   3'- gCUUCG---UCCC---------------CCGGCGCaCGGCG--UCG- -5'
9322 3' -62.6 NC_002512.2 + 201823 0.66 0.711361
Target:  5'- cCGccGCGcccGGGGGCuccuucCGCG-GCCgGCAGCu -3'
miRNA:   3'- -GCuuCGU---CCCCCG------GCGCaCGG-CGUCG- -5'
9322 3' -62.6 NC_002512.2 + 207007 0.66 0.711361
Target:  5'- gCGggGuCAGcauGGuGGCCcaguugugcaGCGUGCCGUccGGCa -3'
miRNA:   3'- -GCuuC-GUC---CC-CCGG----------CGCACGGCG--UCG- -5'
9322 3' -62.6 NC_002512.2 + 90486 0.66 0.705763
Target:  5'- cCGggGCGuccucgacgggaucGGGGCCGag-GCCgGCGGCg -3'
miRNA:   3'- -GCuuCGUc-------------CCCCGGCgcaCGG-CGUCG- -5'
9322 3' -62.6 NC_002512.2 + 129192 0.66 0.70202
Target:  5'- aCGcuGCGGaGGaGGCCGCc-GCCGCuGGCc -3'
miRNA:   3'- -GCuuCGUC-CC-CCGGCGcaCGGCG-UCG- -5'
9322 3' -62.6 NC_002512.2 + 105653 0.66 0.70202
Target:  5'- cCGAGGUAGGGcGaGCCGCagcagacGgCGCGGUa -3'
miRNA:   3'- -GCUUCGUCCC-C-CGGCGca-----CgGCGUCG- -5'
9322 3' -62.6 NC_002512.2 + 203321 0.66 0.70202
Target:  5'- gCGuAGUAGGccaGGGCCGCGaucUUGCAGCc -3'
miRNA:   3'- -GCuUCGUCC---CCCGGCGCac-GGCGUCG- -5'
9322 3' -62.6 NC_002512.2 + 148441 0.66 0.70202
Target:  5'- gGGAGgAcGGGGGCCGgGccccCCGCGGg -3'
miRNA:   3'- gCUUCgU-CCCCCGGCgCac--GGCGUCg -5'
9322 3' -62.6 NC_002512.2 + 121274 0.66 0.692628
Target:  5'- aCGAgAGaCGGGacGGGcCCGCG-GCCGCcGCu -3'
miRNA:   3'- -GCU-UC-GUCC--CCC-GGCGCaCGGCGuCG- -5'
9322 3' -62.6 NC_002512.2 + 201216 0.66 0.692628
Target:  5'- gCGcAGGUAGuuGGCCaaccGCGUGUCGCGGUc -3'
miRNA:   3'- -GC-UUCGUCccCCGG----CGCACGGCGUCG- -5'
9322 3' -62.6 NC_002512.2 + 117884 0.66 0.692628
Target:  5'- aCGGAcGCcGGGGGCC-CGUcGCUGCuccacggccAGCg -3'
miRNA:   3'- -GCUU-CGuCCCCCGGcGCA-CGGCG---------UCG- -5'
9322 3' -62.6 NC_002512.2 + 168152 0.66 0.692628
Target:  5'- gGggGUGGGGGGCgGagaGgggaCGCGGCc -3'
miRNA:   3'- gCuuCGUCCCCCGgCg--Cacg-GCGUCG- -5'
9322 3' -62.6 NC_002512.2 + 202269 0.67 0.686972
Target:  5'- cCGGAGCgucucuccgcgcuguGGGaccGGGgCGcCGUGCCGCcGCg -3'
miRNA:   3'- -GCUUCG---------------UCC---CCCgGC-GCACGGCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.