miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9322 5' -61 NC_002512.2 + 132500 0.66 0.751069
Target:  5'- ----cGUCgCGCCcGCCCCCgUCUCCGg -3'
miRNA:   3'- uuccaCAG-GUGGuCGGGGG-AGAGGUa -5'
9322 5' -61 NC_002512.2 + 96046 0.66 0.741737
Target:  5'- -cGGUGUCCuCCggagaGGCCuCCCUcCUCCu- -3'
miRNA:   3'- uuCCACAGGuGG-----UCGG-GGGA-GAGGua -5'
9322 5' -61 NC_002512.2 + 179884 0.66 0.741737
Target:  5'- ----cGUgCACCGGCUCCCUCUUCu- -3'
miRNA:   3'- uuccaCAgGUGGUCGGGGGAGAGGua -5'
9322 5' -61 NC_002512.2 + 177075 0.66 0.72186
Target:  5'- -cGGUgacccgcGUCCGUCAGCCCCCgcugcgUCUCCGc -3'
miRNA:   3'- uuCCA-------CAGGUGGUCGGGGG------AGAGGUa -5'
9322 5' -61 NC_002512.2 + 203657 0.66 0.71324
Target:  5'- ----cGUCCauACCGGUCCCgUCUCCGUc -3'
miRNA:   3'- uuccaCAGG--UGGUCGGGGgAGAGGUA- -5'
9322 5' -61 NC_002512.2 + 93803 0.67 0.664569
Target:  5'- cGGGcGUCCgaGCCGGCCCCCcggCCGg -3'
miRNA:   3'- uUCCaCAGG--UGGUCGGGGGagaGGUa -5'
9322 5' -61 NC_002512.2 + 174336 0.68 0.644875
Target:  5'- cGGGG-GUCCGCC-GCgCCCUCgUCCGc -3'
miRNA:   3'- -UUCCaCAGGUGGuCGgGGGAG-AGGUa -5'
9322 5' -61 NC_002512.2 + 111754 0.68 0.63501
Target:  5'- -cGGU-UCCGCCcccGCCCCCUCcCCGUc -3'
miRNA:   3'- uuCCAcAGGUGGu--CGGGGGAGaGGUA- -5'
9322 5' -61 NC_002512.2 + 191225 0.68 0.63501
Target:  5'- gGGGGcGUCC-CCGGCCUCCUCgguacCCGc -3'
miRNA:   3'- -UUCCaCAGGuGGUCGGGGGAGa----GGUa -5'
9322 5' -61 NC_002512.2 + 178522 0.7 0.527808
Target:  5'- gAGGGcGUCCGCCAuCUCCgUCUCCGg -3'
miRNA:   3'- -UUCCaCAGGUGGUcGGGGgAGAGGUa -5'
9322 5' -61 NC_002512.2 + 150153 0.7 0.527808
Target:  5'- -cGGcGUCCGCCAGCCCguccucgCUCUCCc- -3'
miRNA:   3'- uuCCaCAGGUGGUCGGGg------GAGAGGua -5'
9322 5' -61 NC_002512.2 + 193313 0.7 0.508934
Target:  5'- gGAGGUcUCCACCGccGCCUCCcggCUCCAg -3'
miRNA:   3'- -UUCCAcAGGUGGU--CGGGGGa--GAGGUa -5'
9322 5' -61 NC_002512.2 + 211197 0.7 0.481177
Target:  5'- cGGGGUGcCCGCC-GCCCacgagcucuuCCUCUCCGa -3'
miRNA:   3'- -UUCCACaGGUGGuCGGG----------GGAGAGGUa -5'
9322 5' -61 NC_002512.2 + 88444 0.71 0.454176
Target:  5'- cAGGcGUCCcggACCAGCaggcggggcaguCCCCUCUCCAg -3'
miRNA:   3'- uUCCaCAGG---UGGUCG------------GGGGAGAGGUa -5'
9322 5' -61 NC_002512.2 + 180103 0.71 0.428018
Target:  5'- -uGGcGUCCACCucGGCCCCCgUgUCCAUg -3'
miRNA:   3'- uuCCaCAGGUGG--UCGGGGG-AgAGGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.