miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9323 3' -54.7 NC_002512.2 + 214381 0.65 0.982114
Target:  5'- cGGGAccacaucguCGUCUUCGgccacuucgggccGGAGCGcgccgCGCCCGa -3'
miRNA:   3'- uCCCU---------GCAGAAGU-------------CCUUGCa----GUGGGU- -5'
9323 3' -54.7 NC_002512.2 + 118540 0.65 0.981719
Target:  5'- gGGGGaaacgaacgcggucGCGUCggacgUCGGGAGCGUCgaaagggaGCCgCGa -3'
miRNA:   3'- -UCCC--------------UGCAGa----AGUCCUUGCAG--------UGG-GU- -5'
9323 3' -54.7 NC_002512.2 + 92667 0.66 0.978092
Target:  5'- cGGGACGgccgcccgCgcCGGGcGCGcCGCCCAc -3'
miRNA:   3'- uCCCUGCa-------GaaGUCCuUGCaGUGGGU- -5'
9323 3' -54.7 NC_002512.2 + 221600 0.66 0.976453
Target:  5'- gAGGGGgGUCgguggacggcgaggaGGGAGCGggucCACCCGg -3'
miRNA:   3'- -UCCCUgCAGaag------------UCCUUGCa---GUGGGU- -5'
9323 3' -54.7 NC_002512.2 + 204070 0.66 0.975724
Target:  5'- cGuGGACGUCgucggCGGGAugGUCuACgCGg -3'
miRNA:   3'- uC-CCUGCAGaa---GUCCUugCAG-UGgGU- -5'
9323 3' -54.7 NC_002512.2 + 209075 0.66 0.974979
Target:  5'- --cGACGUCUUCgugcGGGAGCccgacguccgggucGUCACCCc -3'
miRNA:   3'- uccCUGCAGAAG----UCCUUG--------------CAGUGGGu -5'
9323 3' -54.7 NC_002512.2 + 177555 0.66 0.973175
Target:  5'- -aGGAuCGUCUgguUCGGGGcCGUCGCCa- -3'
miRNA:   3'- ucCCU-GCAGA---AGUCCUuGCAGUGGgu -5'
9323 3' -54.7 NC_002512.2 + 216252 0.67 0.953724
Target:  5'- -cGGuCGUCaUCAGGuGCGcCGCCCGc -3'
miRNA:   3'- ucCCuGCAGaAGUCCuUGCaGUGGGU- -5'
9323 3' -54.7 NC_002512.2 + 178243 0.68 0.945539
Target:  5'- cGGGGACGgcgcggUCUcCGGGucCGUCGCCa- -3'
miRNA:   3'- -UCCCUGC------AGAaGUCCuuGCAGUGGgu -5'
9323 3' -54.7 NC_002512.2 + 187158 0.68 0.941112
Target:  5'- cGGGGAgGUCcaUGGuGGACGUgGCCCGc -3'
miRNA:   3'- -UCCCUgCAGaaGUC-CUUGCAgUGGGU- -5'
9323 3' -54.7 NC_002512.2 + 183958 0.68 0.941112
Target:  5'- cGGGACG-CgcgcUCGGGcguCGUCGCCUg -3'
miRNA:   3'- uCCCUGCaGa---AGUCCuu-GCAGUGGGu -5'
9323 3' -54.7 NC_002512.2 + 166619 0.68 0.936458
Target:  5'- cAGGGcuccGCGUC--CGGGAACGUCGgCUAu -3'
miRNA:   3'- -UCCC----UGCAGaaGUCCUUGCAGUgGGU- -5'
9323 3' -54.7 NC_002512.2 + 198043 0.68 0.936458
Target:  5'- aGGGGACGcggUCgucaCAGGGACGUCucgcgcguCCCc -3'
miRNA:   3'- -UCCCUGC---AGaa--GUCCUUGCAGu-------GGGu -5'
9323 3' -54.7 NC_002512.2 + 181413 0.68 0.931576
Target:  5'- cGGGGACGcgUUCAGGAuggcCGUCAgCUg -3'
miRNA:   3'- -UCCCUGCagAAGUCCUu---GCAGUgGGu -5'
9323 3' -54.7 NC_002512.2 + 190328 0.68 0.928537
Target:  5'- gGGGGACGacggguucgucuaccUCUacgacgaCGGGGGCGUCgGCCCGg -3'
miRNA:   3'- -UCCCUGC---------------AGAa------GUCCUUGCAG-UGGGU- -5'
9323 3' -54.7 NC_002512.2 + 189981 0.69 0.909763
Target:  5'- cGGGaccGCGUCUaCAGGAAgGUCgACCuCAa -3'
miRNA:   3'- uCCC---UGCAGAaGUCCUUgCAG-UGG-GU- -5'
9323 3' -54.7 NC_002512.2 + 225703 0.69 0.897496
Target:  5'- --cGGCGUCcUCAGGAuguGUCGCCCGc -3'
miRNA:   3'- uccCUGCAGaAGUCCUug-CAGUGGGU- -5'
9323 3' -54.7 NC_002512.2 + 223788 0.7 0.891029
Target:  5'- -cGGACGUCgcCGGGGACGUCGgCg- -3'
miRNA:   3'- ucCCUGCAGaaGUCCUUGCAGUgGgu -5'
9323 3' -54.7 NC_002512.2 + 94493 0.71 0.84781
Target:  5'- cGGGGACGcagUCgUCGGGcGCGUCuucgaacccGCCCAg -3'
miRNA:   3'- -UCCCUGC---AGaAGUCCuUGCAG---------UGGGU- -5'
9323 3' -54.7 NC_002512.2 + 211566 0.71 0.84781
Target:  5'- cGGGAUGUCccCAugcGGGGCGUC-CCCAu -3'
miRNA:   3'- uCCCUGCAGaaGU---CCUUGCAGuGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.