miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9323 5' -53.7 NC_002512.2 + 101287 0.66 0.986342
Target:  5'- --gGCAGguacccggACGUCCCGGccucucgcaGGGUcGGCCc -3'
miRNA:   3'- caaCGUCa-------UGCAGGGCU---------UCUA-CCGGa -5'
9323 5' -53.7 NC_002512.2 + 182000 0.66 0.982787
Target:  5'- --gGCGG-ACGUCCuCGggGucaGGCCc -3'
miRNA:   3'- caaCGUCaUGCAGG-GCuuCua-CCGGa -5'
9323 5' -53.7 NC_002512.2 + 75251 0.66 0.982787
Target:  5'- --cGCGGccGCGUCCCGuccccacGAUGGCg- -3'
miRNA:   3'- caaCGUCa-UGCAGGGCuu-----CUACCGga -5'
9323 5' -53.7 NC_002512.2 + 114664 0.66 0.978575
Target:  5'- --aGUGGgugACGuUCCUGAAGAcgucccUGGCCUg -3'
miRNA:   3'- caaCGUCa--UGC-AGGGCUUCU------ACCGGA- -5'
9323 5' -53.7 NC_002512.2 + 208801 0.67 0.973644
Target:  5'- --gGCGGU-CGcCCCGGAGcgGGaCCg -3'
miRNA:   3'- caaCGUCAuGCaGGGCUUCuaCC-GGa -5'
9323 5' -53.7 NC_002512.2 + 97406 0.67 0.970892
Target:  5'- --cGCAGUuCcUCCUGggGcUGGCCa -3'
miRNA:   3'- caaCGUCAuGcAGGGCuuCuACCGGa -5'
9323 5' -53.7 NC_002512.2 + 193908 0.67 0.970606
Target:  5'- --cGCGGUcggcggaucGCGUCCCGGAcuccgcuGAcGGCCg -3'
miRNA:   3'- caaCGUCA---------UGCAGGGCUU-------CUaCCGGa -5'
9323 5' -53.7 NC_002512.2 + 198997 0.67 0.961409
Target:  5'- gGUUGUccgcGUACGUCUCGA---UGGCCUc -3'
miRNA:   3'- -CAACGu---CAUGCAGGGCUucuACCGGA- -5'
9323 5' -53.7 NC_002512.2 + 174158 0.68 0.954011
Target:  5'- --cGUGGUcaccGCGUCCCGggGuacgAUGGUCg -3'
miRNA:   3'- caaCGUCA----UGCAGGGCuuC----UACCGGa -5'
9323 5' -53.7 NC_002512.2 + 123620 0.68 0.94571
Target:  5'- -cUGCAGUAUuugaagacggGUCCCGggGAgagcGcGCCg -3'
miRNA:   3'- caACGUCAUG----------CAGGGCuuCUa---C-CGGa -5'
9323 5' -53.7 NC_002512.2 + 96681 0.69 0.931513
Target:  5'- --gGCGGacgACGUCCCGAAGAUaacgGGUUUc -3'
miRNA:   3'- caaCGUCa--UGCAGGGCUUCUA----CCGGA- -5'
9323 5' -53.7 NC_002512.2 + 157062 0.69 0.931513
Target:  5'- --gGCGG-GCGUCCCGggGuccggGGUCg -3'
miRNA:   3'- caaCGUCaUGCAGGGCuuCua---CCGGa -5'
9323 5' -53.7 NC_002512.2 + 36837 0.69 0.926309
Target:  5'- --cGCGGUcagAUGUCCUGuaucuGGUGGCCa -3'
miRNA:   3'- caaCGUCA---UGCAGGGCuu---CUACCGGa -5'
9323 5' -53.7 NC_002512.2 + 38918 0.69 0.923072
Target:  5'- --cGUAGUGCGaCCCGucagaaguuuuaucGGGUGGCCg -3'
miRNA:   3'- caaCGUCAUGCaGGGCu-------------UCUACCGGa -5'
9323 5' -53.7 NC_002512.2 + 102823 0.69 0.920867
Target:  5'- --cGCAGaagacgcACGUCCgCGAGGAgacgGGCCa -3'
miRNA:   3'- caaCGUCa------UGCAGG-GCUUCUa---CCGGa -5'
9323 5' -53.7 NC_002512.2 + 187080 0.7 0.909276
Target:  5'- --aGgAGgcCGUgCUGAAGAUGGCCg -3'
miRNA:   3'- caaCgUCauGCAgGGCUUCUACCGGa -5'
9323 5' -53.7 NC_002512.2 + 127592 0.7 0.909276
Target:  5'- -aUGUAGgcguCGUCCaCGguGGUGGCCa -3'
miRNA:   3'- caACGUCau--GCAGG-GCuuCUACCGGa -5'
9323 5' -53.7 NC_002512.2 + 185857 0.7 0.903129
Target:  5'- --aGCGGUACGUCgaGGAGGgcgccucgGGCCg -3'
miRNA:   3'- caaCGUCAUGCAGggCUUCUa-------CCGGa -5'
9323 5' -53.7 NC_002512.2 + 4007 0.7 0.903129
Target:  5'- --aGCAGUAU-UCCCGAGGcgGaGCCg -3'
miRNA:   3'- caaCGUCAUGcAGGGCUUCuaC-CGGa -5'
9323 5' -53.7 NC_002512.2 + 159933 0.7 0.890143
Target:  5'- -gUGCGaUACGUCCCc--GGUGGCCg -3'
miRNA:   3'- caACGUcAUGCAGGGcuuCUACCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.