miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9324 3' -56.5 NC_002512.2 + 7383 0.66 0.944824
Target:  5'- aAACGCUCCgGaCgacgaucGCGUCGACU-GCAa -3'
miRNA:   3'- -UUGCGAGGgCaGa------CGCAGUUGAgCGU- -5'
9324 3' -56.5 NC_002512.2 + 94418 0.66 0.944824
Target:  5'- uGGCGCUCCaGUCggccGCGUCGAa-CGCc -3'
miRNA:   3'- -UUGCGAGGgCAGa---CGCAGUUgaGCGu -5'
9324 3' -56.5 NC_002512.2 + 217459 0.66 0.930737
Target:  5'- --aGCUCCCGcCUcGCGcgCGgcgaGCUCGCGa -3'
miRNA:   3'- uugCGAGGGCaGA-CGCa-GU----UGAGCGU- -5'
9324 3' -56.5 NC_002512.2 + 190116 0.66 0.920203
Target:  5'- cGGCGCUUCCacggcagCUGCGUgCuGCUCGCc -3'
miRNA:   3'- -UUGCGAGGGca-----GACGCA-GuUGAGCGu -5'
9324 3' -56.5 NC_002512.2 + 188575 0.67 0.90269
Target:  5'- cGACGaCUUCUcgGUCUGCGUCGACcaggUCGUc -3'
miRNA:   3'- -UUGC-GAGGG--CAGACGCAGUUG----AGCGu -5'
9324 3' -56.5 NC_002512.2 + 205155 0.67 0.90145
Target:  5'- cACGCUgCCCGUCgcucucgacgccGCGUCuccCUCGCc -3'
miRNA:   3'- uUGCGA-GGGCAGa-----------CGCAGuu-GAGCGu -5'
9324 3' -56.5 NC_002512.2 + 180289 0.67 0.889893
Target:  5'- cGGCGUUCCCGUC-GCccUCGACaggCGCAg -3'
miRNA:   3'- -UUGCGAGGGCAGaCGc-AGUUGa--GCGU- -5'
9324 3' -56.5 NC_002512.2 + 174221 0.68 0.869079
Target:  5'- cAGCGC-CCCGcCcgGCGUCGAgUCGUc -3'
miRNA:   3'- -UUGCGaGGGCaGa-CGCAGUUgAGCGu -5'
9324 3' -56.5 NC_002512.2 + 208298 0.68 0.84643
Target:  5'- gGGCGCuuUCCCGUCUGCGaCAugaagCGCc -3'
miRNA:   3'- -UUGCG--AGGGCAGACGCaGUuga--GCGu -5'
9324 3' -56.5 NC_002512.2 + 200527 0.68 0.84643
Target:  5'- cACGCUgCUGUCcGUGUCcguCUCGCGg -3'
miRNA:   3'- uUGCGAgGGCAGaCGCAGuu-GAGCGU- -5'
9324 3' -56.5 NC_002512.2 + 99911 0.69 0.830388
Target:  5'- cGGCGCUCCCGgcgGUGuUCGAUcgcgUCGCAg -3'
miRNA:   3'- -UUGCGAGGGCagaCGC-AGUUG----AGCGU- -5'
9324 3' -56.5 NC_002512.2 + 199853 0.69 0.830388
Target:  5'- gGACGCUCuCCGaucucuagccguUCUGUGcggCGGCUCGCc -3'
miRNA:   3'- -UUGCGAG-GGC------------AGACGCa--GUUGAGCGu -5'
9324 3' -56.5 NC_002512.2 + 136829 0.7 0.750537
Target:  5'- cGACGC-CCCG-CgGCGUCGuCUCGCu -3'
miRNA:   3'- -UUGCGaGGGCaGaCGCAGUuGAGCGu -5'
9324 3' -56.5 NC_002512.2 + 227807 0.71 0.721819
Target:  5'- -cCGCUCCCGcCcgGCGUgGACUcCGCGc -3'
miRNA:   3'- uuGCGAGGGCaGa-CGCAgUUGA-GCGU- -5'
9324 3' -56.5 NC_002512.2 + 140417 0.71 0.721819
Target:  5'- cGCGgucuccCUCCCGUCcGCGUCG-CUCGCc -3'
miRNA:   3'- uUGC------GAGGGCAGaCGCAGUuGAGCGu -5'
9324 3' -56.5 NC_002512.2 + 155286 0.71 0.692435
Target:  5'- -cCGCUCCgGUCcGCGUCGGC-CGUg -3'
miRNA:   3'- uuGCGAGGgCAGaCGCAGUUGaGCGu -5'
9324 3' -56.5 NC_002512.2 + 185314 0.72 0.662618
Target:  5'- gGGCGCgaggagcugCCCGUCUGCGUC-GC-CGCc -3'
miRNA:   3'- -UUGCGa--------GGGCAGACGCAGuUGaGCGu -5'
9324 3' -56.5 NC_002512.2 + 181515 0.72 0.632587
Target:  5'- cGCGUUCCCGUCgucgcUGCcguucagCAGCUCGCAc -3'
miRNA:   3'- uUGCGAGGGCAG-----ACGca-----GUUGAGCGU- -5'
9324 3' -56.5 NC_002512.2 + 98375 0.73 0.622566
Target:  5'- cGGCGuCUCCCGUCccgggGCG-CAGCUgGCAa -3'
miRNA:   3'- -UUGC-GAGGGCAGa----CGCaGUUGAgCGU- -5'
9324 3' -56.5 NC_002512.2 + 128250 0.75 0.495288
Target:  5'- cGCGCUCCCcUCgaGCGgCGACUCGCGu -3'
miRNA:   3'- uUGCGAGGGcAGa-CGCaGUUGAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.