miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9324 5' -55.5 NC_002512.2 + 99231 0.66 0.969869
Target:  5'- cCUCG-GAGAgcccCGCGCagaagUCGAGGGa -3'
miRNA:   3'- -GAGCuCUCUa---GCGCGgca--AGCUCCUa -5'
9324 5' -55.5 NC_002512.2 + 223748 0.66 0.966293
Target:  5'- gUCGuGGAGGUCGUGuCCGacgacagcgaggUCGAGGGa -3'
miRNA:   3'- gAGC-UCUCUAGCGC-GGCa-----------AGCUCCUa -5'
9324 5' -55.5 NC_002512.2 + 109018 0.67 0.940334
Target:  5'- cCUCGAGGGG-CGgGCgGggaCGAGGAc -3'
miRNA:   3'- -GAGCUCUCUaGCgCGgCaa-GCUCCUa -5'
9324 5' -55.5 NC_002512.2 + 220018 0.68 0.914688
Target:  5'- gUCGAGAGGcCGCuCCGUcUCGGGGu- -3'
miRNA:   3'- gAGCUCUCUaGCGcGGCA-AGCUCCua -5'
9324 5' -55.5 NC_002512.2 + 214408 0.68 0.908878
Target:  5'- uUCGGGccGGAgCGCGCCGcgccCGAGGAc -3'
miRNA:   3'- gAGCUC--UCUaGCGCGGCaa--GCUCCUa -5'
9324 5' -55.5 NC_002512.2 + 99120 0.69 0.876524
Target:  5'- gCUCcaAGAGAUCGCGCaCGgccggaucgUCGGGGGa -3'
miRNA:   3'- -GAGc-UCUCUAGCGCG-GCa--------AGCUCCUa -5'
9324 5' -55.5 NC_002512.2 + 212207 0.69 0.869415
Target:  5'- gCUCGAcgagGAGAUCGuCGgCGUgcgCGGGGAc -3'
miRNA:   3'- -GAGCU----CUCUAGC-GCgGCAa--GCUCCUa -5'
9324 5' -55.5 NC_002512.2 + 219669 0.7 0.814305
Target:  5'- gUCGGGAucuGggCGCGCCGccCGAGGAc -3'
miRNA:   3'- gAGCUCU---CuaGCGCGGCaaGCUCCUa -5'
9324 5' -55.5 NC_002512.2 + 227317 0.71 0.797039
Target:  5'- --gGGGAGA-CGCGCCGgcgccCGAGGAa -3'
miRNA:   3'- gagCUCUCUaGCGCGGCaa---GCUCCUa -5'
9324 5' -55.5 NC_002512.2 + 195087 0.73 0.683882
Target:  5'- aCUCGAGGGGUCGagGCCGa--GGGGAUu -3'
miRNA:   3'- -GAGCUCUCUAGCg-CGGCaagCUCCUA- -5'
9324 5' -55.5 NC_002512.2 + 223921 0.76 0.545126
Target:  5'- -gCGAGAGGUCGaGCCGgaCGGGGAg -3'
miRNA:   3'- gaGCUCUCUAGCgCGGCaaGCUCCUa -5'
9324 5' -55.5 NC_002512.2 + 104958 0.76 0.51624
Target:  5'- gUCGGGAGAUCGaCGCCGgguccgccUCGAGGu- -3'
miRNA:   3'- gAGCUCUCUAGC-GCGGCa-------AGCUCCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.