miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9325 3' -53.3 NC_002512.2 + 176431 0.66 0.992134
Target:  5'- aGGGuGGCCAUcugCGCCGCgGUCggggugucgggUUCCg -3'
miRNA:   3'- aCUC-CUGGUGua-GUGGCGgUAG-----------AAGG- -5'
9325 3' -53.3 NC_002512.2 + 92951 0.66 0.992134
Target:  5'- gGAGGugCACAgcgACCGaaaGUCggUCCg -3'
miRNA:   3'- aCUCCugGUGUag-UGGCgg-UAGa-AGG- -5'
9325 3' -53.3 NC_002512.2 + 3132 0.66 0.992134
Target:  5'- aUGAccGGCCGCAcgccuCCGCCGUCU-CCg -3'
miRNA:   3'- -ACUc-CUGGUGUagu--GGCGGUAGAaGG- -5'
9325 3' -53.3 NC_002512.2 + 123861 0.66 0.992134
Target:  5'- aGAGGacGCCGCAcccccggcggCGCCGCCcgUUcgCCg -3'
miRNA:   3'- aCUCC--UGGUGUa---------GUGGCGGuaGAa-GG- -5'
9325 3' -53.3 NC_002512.2 + 88971 0.66 0.992134
Target:  5'- cGAGccGCCGCGUCGuccCCGUCGUCgacCCg -3'
miRNA:   3'- aCUCc-UGGUGUAGU---GGCGGUAGaa-GG- -5'
9325 3' -53.3 NC_002512.2 + 172663 0.66 0.991029
Target:  5'- cGGGGAcgcCCGCGUCuCgGCCcUCgucUCCg -3'
miRNA:   3'- aCUCCU---GGUGUAGuGgCGGuAGa--AGG- -5'
9325 3' -53.3 NC_002512.2 + 150673 0.66 0.991029
Target:  5'- cGAGGuCCGCGggCGCgGCgGUCgccCCg -3'
miRNA:   3'- aCUCCuGGUGUa-GUGgCGgUAGaa-GG- -5'
9325 3' -53.3 NC_002512.2 + 178692 0.66 0.991029
Target:  5'- cGAGGcCCGCAgcgCgGCCGCCGcguugCUggCCa -3'
miRNA:   3'- aCUCCuGGUGUa--G-UGGCGGUa----GAa-GG- -5'
9325 3' -53.3 NC_002512.2 + 174336 0.66 0.989804
Target:  5'- cGGGGGuCCGCcgCGCCcUCGUCcgCCg -3'
miRNA:   3'- aCUCCU-GGUGuaGUGGcGGUAGaaGG- -5'
9325 3' -53.3 NC_002512.2 + 26503 0.66 0.989804
Target:  5'- uUGaAGGGCCugGaauGCCGCCGaucgUUUCCg -3'
miRNA:   3'- -AC-UCCUGGugUag-UGGCGGUa---GAAGG- -5'
9325 3' -53.3 NC_002512.2 + 200112 0.66 0.989804
Target:  5'- cGGGGuACUucaGCAUCGCCGUCgcGUCgaucgCCg -3'
miRNA:   3'- aCUCC-UGG---UGUAGUGGCGG--UAGaa---GG- -5'
9325 3' -53.3 NC_002512.2 + 214293 0.66 0.989804
Target:  5'- cGAGGGCU---UCACCuUCGUCUUCg -3'
miRNA:   3'- aCUCCUGGuguAGUGGcGGUAGAAGg -5'
9325 3' -53.3 NC_002512.2 + 146110 0.66 0.989804
Target:  5'- cGGcGGCgGCggCGgCGCCGUCUUCUg -3'
miRNA:   3'- aCUcCUGgUGuaGUgGCGGUAGAAGG- -5'
9325 3' -53.3 NC_002512.2 + 178513 0.66 0.989804
Target:  5'- -cAGGGCuCugAgggCGuCCGCCAUCU-CCg -3'
miRNA:   3'- acUCCUG-GugUa--GU-GGCGGUAGAaGG- -5'
9325 3' -53.3 NC_002512.2 + 213216 0.66 0.989804
Target:  5'- -uGGGACCGCcggGUCgugGCCGCCAaCggcgCCg -3'
miRNA:   3'- acUCCUGGUG---UAG---UGGCGGUaGaa--GG- -5'
9325 3' -53.3 NC_002512.2 + 91037 0.66 0.989675
Target:  5'- --uGGACgGCGUCAacaucucCCGCCuGUCgUCCg -3'
miRNA:   3'- acuCCUGgUGUAGU-------GGCGG-UAGaAGG- -5'
9325 3' -53.3 NC_002512.2 + 226817 0.66 0.988453
Target:  5'- cGuGGccgccgccgccGCCGCGUcCGCCGCCGUCa--- -3'
miRNA:   3'- aCuCC-----------UGGUGUA-GUGGCGGUAGaagg -5'
9325 3' -53.3 NC_002512.2 + 226645 0.66 0.988453
Target:  5'- cGcGGACCGuCGUCACCcgacgcGCCGgg-UCCa -3'
miRNA:   3'- aCuCCUGGU-GUAGUGG------CGGUagaAGG- -5'
9325 3' -53.3 NC_002512.2 + 206700 0.66 0.988453
Target:  5'- aGGGcGACCGuCGUCGCC-CCGg--UCCg -3'
miRNA:   3'- aCUC-CUGGU-GUAGUGGcGGUagaAGG- -5'
9325 3' -53.3 NC_002512.2 + 200425 0.66 0.988453
Target:  5'- gGAGGACgAggagaagggguCGUCguagcgcagGCCGCCGUUUUUCa -3'
miRNA:   3'- aCUCCUGgU-----------GUAG---------UGGCGGUAGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.