miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9325 5' -68.3 NC_002512.2 + 179074 0.66 0.495877
Target:  5'- -aGGUagugucuguacagCGCCGGGgCCGACGCCu-CGUg -3'
miRNA:   3'- uaCCG-------------GCGGCCCgGGCUGCGGccGCG- -5'
9325 5' -68.3 NC_002512.2 + 217762 0.66 0.488126
Target:  5'- ---aCC-CCGGGCCCGuccccguCGCCGGgGUc -3'
miRNA:   3'- uaccGGcGGCCCGGGCu------GCGGCCgCG- -5'
9325 5' -68.3 NC_002512.2 + 176492 0.66 0.488126
Target:  5'- -cGGCCGCCaGGaaGCCCGuCGUCcauuccaGCGCc -3'
miRNA:   3'- uaCCGGCGG-CC--CGGGCuGCGGc------CGCG- -5'
9325 5' -68.3 NC_002512.2 + 124758 0.66 0.488126
Target:  5'- -gGaGCCGUCGucGGCCCaGACGaCC-GCGCa -3'
miRNA:   3'- uaC-CGGCGGC--CCGGG-CUGC-GGcCGCG- -5'
9325 5' -68.3 NC_002512.2 + 121395 0.66 0.488126
Target:  5'- -cGGCCGgaCGGaGCC--GCGCCuGGCGUg -3'
miRNA:   3'- uaCCGGCg-GCC-CGGgcUGCGG-CCGCG- -5'
9325 5' -68.3 NC_002512.2 + 101436 0.66 0.488126
Target:  5'- -cGGCCGgCGGcGCggCGACGCCGaGaGCg -3'
miRNA:   3'- uaCCGGCgGCC-CGg-GCUGCGGC-CgCG- -5'
9325 5' -68.3 NC_002512.2 + 185614 0.66 0.488126
Target:  5'- cUGGCCaaCGGcGuCCCG-UGUCGGUGCa -3'
miRNA:   3'- uACCGGcgGCC-C-GGGCuGCGGCCGCG- -5'
9325 5' -68.3 NC_002512.2 + 153439 0.66 0.488126
Target:  5'- -aGGCCgGCCGGGCgCGGCuuuuauacCCGaGCGa -3'
miRNA:   3'- uaCCGG-CGGCCCGgGCUGc-------GGC-CGCg -5'
9325 5' -68.3 NC_002512.2 + 102677 0.66 0.488126
Target:  5'- -cGGCCGCCcgcuguccgGGGaggaCGugGCUGaGCGUg -3'
miRNA:   3'- uaCCGGCGG---------CCCgg--GCugCGGC-CGCG- -5'
9325 5' -68.3 NC_002512.2 + 87779 0.66 0.485556
Target:  5'- -cGGCCGCCgacgggucgguaccGGGUCCG-CGuUCGGuUGCa -3'
miRNA:   3'- uaCCGGCGG--------------CCCGGGCuGC-GGCC-GCG- -5'
9325 5' -68.3 NC_002512.2 + 224721 0.66 0.479583
Target:  5'- -cGGCCGCCGc-CCCGgucGCGCCGcUGCc -3'
miRNA:   3'- uaCCGGCGGCccGGGC---UGCGGCcGCG- -5'
9325 5' -68.3 NC_002512.2 + 117097 0.66 0.479583
Target:  5'- -gGGCCGCCcuGGaCCCGGCacagcgGCaCGGgGCc -3'
miRNA:   3'- uaCCGGCGGc-CC-GGGCUG------CG-GCCgCG- -5'
9325 5' -68.3 NC_002512.2 + 121050 0.66 0.479583
Target:  5'- cUGG--GCCGGGuaCCCGcCGCCcgaGGCGCg -3'
miRNA:   3'- uACCggCGGCCC--GGGCuGCGG---CCGCG- -5'
9325 5' -68.3 NC_002512.2 + 156485 0.66 0.479583
Target:  5'- -gGGCuCGgCGGGCUgGGCGgacaCGGCGg -3'
miRNA:   3'- uaCCG-GCgGCCCGGgCUGCg---GCCGCg -5'
9325 5' -68.3 NC_002512.2 + 179176 0.66 0.479583
Target:  5'- cUGGCgaccuuCGCCGGGUCCucGgGCCGGUccaGCg -3'
miRNA:   3'- uACCG------GCGGCCCGGGc-UgCGGCCG---CG- -5'
9325 5' -68.3 NC_002512.2 + 194048 0.66 0.479583
Target:  5'- -aGGCCGCCuGGCUgG-UGagGGCGCa -3'
miRNA:   3'- uaCCGGCGGcCCGGgCuGCggCCGCG- -5'
9325 5' -68.3 NC_002512.2 + 227995 0.66 0.479583
Target:  5'- -gGGCCGa-GGGCCgGA-GCCGGaCGg -3'
miRNA:   3'- uaCCGGCggCCCGGgCUgCGGCC-GCg -5'
9325 5' -68.3 NC_002512.2 + 154699 0.66 0.479583
Target:  5'- -cGGCCGuCCGgcgucgagcGGCgCGACGgaaCGGCGUu -3'
miRNA:   3'- uaCCGGC-GGC---------CCGgGCUGCg--GCCGCG- -5'
9325 5' -68.3 NC_002512.2 + 191312 0.66 0.479583
Target:  5'- -gGGCCGggacgCGGGUCgGgACGCgGGUGCc -3'
miRNA:   3'- uaCCGGCg----GCCCGGgC-UGCGgCCGCG- -5'
9325 5' -68.3 NC_002512.2 + 221431 0.66 0.479583
Target:  5'- -cGGCCGCCaugcGGaCCG-CgGCCGGgGCg -3'
miRNA:   3'- uaCCGGCGGc---CCgGGCuG-CGGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.