miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9327 3' -58.1 NC_002512.2 + 92698 0.66 0.871592
Target:  5'- cACCGGGcGGaCCGaCGACGCCg---- -3'
miRNA:   3'- uUGGCCCaCC-GGCaGUUGCGGaaguu -5'
9327 3' -58.1 NC_002512.2 + 220333 0.66 0.86432
Target:  5'- -uCCGGGgGGCCGgacggccucgUCAACGCCg---- -3'
miRNA:   3'- uuGGCCCaCCGGC----------AGUUGCGGaaguu -5'
9327 3' -58.1 NC_002512.2 + 218222 0.66 0.86432
Target:  5'- gGGCCGcGGcgGGCCG-CGGCGCCg---- -3'
miRNA:   3'- -UUGGC-CCa-CCGGCaGUUGCGGaaguu -5'
9327 3' -58.1 NC_002512.2 + 214129 0.67 0.841328
Target:  5'- -gUCaGGUgcGGCC-UCAGCGCCUUCGAc -3'
miRNA:   3'- uuGGcCCA--CCGGcAGUUGCGGAAGUU- -5'
9327 3' -58.1 NC_002512.2 + 104260 0.67 0.820073
Target:  5'- cAACCGGGUGaCCGaauaccugacccACGCCUUCAAc -3'
miRNA:   3'- -UUGGCCCACcGGCagu---------UGCGGAAGUU- -5'
9327 3' -58.1 NC_002512.2 + 213222 0.67 0.808162
Target:  5'- cGCCGGGUcguGGCCGcCAacgGCGCCg---- -3'
miRNA:   3'- uUGGCCCA---CCGGCaGU---UGCGGaaguu -5'
9327 3' -58.1 NC_002512.2 + 173551 0.68 0.790634
Target:  5'- -cCCGGGcUGuGCCGUCuacuCGCgCUUCAGc -3'
miRNA:   3'- uuGGCCC-AC-CGGCAGuu--GCG-GAAGUU- -5'
9327 3' -58.1 NC_002512.2 + 176427 0.68 0.790634
Target:  5'- cAGCaGGGUGGCCaUCuGCGCCgcggUCGGg -3'
miRNA:   3'- -UUGgCCCACCGGcAGuUGCGGa---AGUU- -5'
9327 3' -58.1 NC_002512.2 + 196632 0.68 0.763339
Target:  5'- -cCCGGGUGGCCG---ACGCCg---- -3'
miRNA:   3'- uuGGCCCACCGGCaguUGCGGaaguu -5'
9327 3' -58.1 NC_002512.2 + 94489 0.69 0.725426
Target:  5'- cAGCCGGGgacgcaGUCGUCGggcGCGUCUUCGAa -3'
miRNA:   3'- -UUGGCCCac----CGGCAGU---UGCGGAAGUU- -5'
9327 3' -58.1 NC_002512.2 + 181410 0.69 0.699107
Target:  5'- cGCCGGGgacgcguucaggaUGGCCGUCAGCugcgggaucaccgucGUCUUCGu -3'
miRNA:   3'- uUGGCCC-------------ACCGGCAGUUG---------------CGGAAGUu -5'
9327 3' -58.1 NC_002512.2 + 188302 0.69 0.696155
Target:  5'- cAACCGGGUGGCCuuccacgagGUCAagaaccugcGCGCCa---- -3'
miRNA:   3'- -UUGGCCCACCGG---------CAGU---------UGCGGaaguu -5'
9327 3' -58.1 NC_002512.2 + 126407 0.69 0.696155
Target:  5'- -cCCGGGc-GCCGUCGACGCCg---- -3'
miRNA:   3'- uuGGCCCacCGGCAGUUGCGGaaguu -5'
9327 3' -58.1 NC_002512.2 + 164439 0.7 0.646453
Target:  5'- cGCCGGGaaGCCGcUCGGCGCCcUCGg -3'
miRNA:   3'- uUGGCCCacCGGC-AGUUGCGGaAGUu -5'
9327 3' -58.1 NC_002512.2 + 211249 0.71 0.616438
Target:  5'- -gUCGaGGcGGCCGUCGACGCCaugUUCGAc -3'
miRNA:   3'- uuGGC-CCaCCGGCAGUUGCGG---AAGUU- -5'
9327 3' -58.1 NC_002512.2 + 221767 0.71 0.595476
Target:  5'- cAGCUGGGcGGCCGUCGuguccugGCGCCUg--- -3'
miRNA:   3'- -UUGGCCCaCCGGCAGU-------UGCGGAaguu -5'
9327 3' -58.1 NC_002512.2 + 185345 0.73 0.499106
Target:  5'- -cCCGGGUGGCCGcCGccauCGCCgUCGAc -3'
miRNA:   3'- uuGGCCCACCGGCaGUu---GCGGaAGUU- -5'
9327 3' -58.1 NC_002512.2 + 222219 0.74 0.45307
Target:  5'- -uCgGGGUGGCCGUCGgggccGCGuCCUUCGu -3'
miRNA:   3'- uuGgCCCACCGGCAGU-----UGC-GGAAGUu -5'
9327 3' -58.1 NC_002512.2 + 215541 0.75 0.384558
Target:  5'- -uCCGGGagauccugcUGGCCGUCGGCGCC-UCGg -3'
miRNA:   3'- uuGGCCC---------ACCGGCAGUUGCGGaAGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.