miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9327 5' -53.1 NC_002512.2 + 181923 0.66 0.992539
Target:  5'- uGGUCcgCGGCCUCc--GCCACCu--- -3'
miRNA:   3'- -CCAGuaGUUGGAGuucCGGUGGcaca -5'
9327 5' -53.1 NC_002512.2 + 158671 0.66 0.992539
Target:  5'- cGGUCAUC-GCCggaUCAuGGCCgGCCGg-- -3'
miRNA:   3'- -CCAGUAGuUGG---AGUuCCGG-UGGCaca -5'
9327 5' -53.1 NC_002512.2 + 111880 0.66 0.992539
Target:  5'- uGGUCGUgAggGCCUCGAGGCaauCCa--- -3'
miRNA:   3'- -CCAGUAgU--UGGAGUUCCGgu-GGcaca -5'
9327 5' -53.1 NC_002512.2 + 94648 0.66 0.992539
Target:  5'- cGGaCGaCGGCCUCGAGGCgGCCc--- -3'
miRNA:   3'- -CCaGUaGUUGGAGUUCCGgUGGcaca -5'
9327 5' -53.1 NC_002512.2 + 7615 0.66 0.992539
Target:  5'- cGGUCG-CGGCgCguuuGGUCACCGUGg -3'
miRNA:   3'- -CCAGUaGUUG-GaguuCCGGUGGCACa -5'
9327 5' -53.1 NC_002512.2 + 200758 0.66 0.992539
Target:  5'- uGGUCGUCGuacaugguggucGCCaUCGccauGGCCGCCGc-- -3'
miRNA:   3'- -CCAGUAGU------------UGG-AGUu---CCGGUGGCaca -5'
9327 5' -53.1 NC_002512.2 + 126303 0.66 0.991914
Target:  5'- cGGuUCAUCuccaggaugcuccugGACgaCGAGGCCGCCGcGUc -3'
miRNA:   3'- -CC-AGUAG---------------UUGgaGUUCCGGUGGCaCA- -5'
9327 5' -53.1 NC_002512.2 + 197474 0.66 0.991475
Target:  5'- -uUCGUCAGCUUCGGGGagcCCAUCGg-- -3'
miRNA:   3'- ccAGUAGUUGGAGUUCC---GGUGGCaca -5'
9327 5' -53.1 NC_002512.2 + 155798 0.66 0.990295
Target:  5'- -cUCGUgCccuGCCUCGAGGagGCCGUGUc -3'
miRNA:   3'- ccAGUA-Gu--UGGAGUUCCggUGGCACA- -5'
9327 5' -53.1 NC_002512.2 + 110494 0.66 0.990295
Target:  5'- cGG-CAcgCGGCCcugcagCAGGGCCGCCGcGUc -3'
miRNA:   3'- -CCaGUa-GUUGGa-----GUUCCGGUGGCaCA- -5'
9327 5' -53.1 NC_002512.2 + 227556 0.66 0.990295
Target:  5'- gGGUCcgCGACC--GAGGCCuCCGg-- -3'
miRNA:   3'- -CCAGuaGUUGGagUUCCGGuGGCaca -5'
9327 5' -53.1 NC_002512.2 + 108493 0.66 0.990295
Target:  5'- cGGUCGUCAAgggCGAGGCCGggcCCGg-- -3'
miRNA:   3'- -CCAGUAGUUggaGUUCCGGU---GGCaca -5'
9327 5' -53.1 NC_002512.2 + 179383 0.66 0.99017
Target:  5'- aGGUcCAUCAucGCCUCGGGgaugcgcGCCAuccugcgcCCGUGUu -3'
miRNA:   3'- -CCA-GUAGU--UGGAGUUC-------CGGU--------GGCACA- -5'
9327 5' -53.1 NC_002512.2 + 134205 0.66 0.98899
Target:  5'- gGGagAUCGACCUgAAGGCCcCCu--- -3'
miRNA:   3'- -CCagUAGUUGGAgUUCCGGuGGcaca -5'
9327 5' -53.1 NC_002512.2 + 113774 0.66 0.98899
Target:  5'- aGUCGUCGAUCUCG-GGC-ACgGUGa -3'
miRNA:   3'- cCAGUAGUUGGAGUuCCGgUGgCACa -5'
9327 5' -53.1 NC_002512.2 + 189178 0.66 0.98899
Target:  5'- cGUUAUCAGCCggcaagCAcccAGGUCGCCGcGg -3'
miRNA:   3'- cCAGUAGUUGGa-----GU---UCCGGUGGCaCa -5'
9327 5' -53.1 NC_002512.2 + 185859 0.66 0.987552
Target:  5'- cGGUaCGUCGaggagggcGCCUC-GGGCCGCUGgcagGUc -3'
miRNA:   3'- -CCA-GUAGU--------UGGAGuUCCGGUGGCa---CA- -5'
9327 5' -53.1 NC_002512.2 + 222217 0.66 0.987552
Target:  5'- cGUCGgggUGGCCgUCGGGGCCgcguccuucgucGCCGUGg -3'
miRNA:   3'- cCAGUa--GUUGG-AGUUCCGG------------UGGCACa -5'
9327 5' -53.1 NC_002512.2 + 186316 0.66 0.987552
Target:  5'- uGGUCAUCGGcaacguCCUCAuGGaCGCCGUc- -3'
miRNA:   3'- -CCAGUAGUU------GGAGUuCCgGUGGCAca -5'
9327 5' -53.1 NC_002512.2 + 190001 0.67 0.985973
Target:  5'- ---gGUCGACCUCAAguuGGCCGCgGUc- -3'
miRNA:   3'- ccagUAGUUGGAGUU---CCGGUGgCAca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.