miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9329 3' -54.8 NC_002512.2 + 200346 0.66 0.984531
Target:  5'- uCCUgUCGgcgGACGG--GGGGACggggCGGGGg -3'
miRNA:   3'- -GGA-AGCa--CUGCCagCUCCUGa---GCCUC- -5'
9329 3' -54.8 NC_002512.2 + 227984 0.66 0.984531
Target:  5'- cCCggCGccGAgGGcCGAGGGC-CGGAGc -3'
miRNA:   3'- -GGaaGCa-CUgCCaGCUCCUGaGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 225525 0.66 0.982735
Target:  5'- gCUUCGcgGACGGgacggCGGGaGCgCGGAGg -3'
miRNA:   3'- gGAAGCa-CUGCCa----GCUCcUGaGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 183440 0.66 0.982735
Target:  5'- uUCUUCGUcucgauGGCGGUCGAGaACgUCGGc- -3'
miRNA:   3'- -GGAAGCA------CUGCCAGCUCcUG-AGCCuc -5'
9329 3' -54.8 NC_002512.2 + 225398 0.66 0.980785
Target:  5'- cUCUUCGggGACGG-CGccGGGgUCGGGGu -3'
miRNA:   3'- -GGAAGCa-CUGCCaGCu-CCUgAGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 99616 0.66 0.980785
Target:  5'- cCCgcgcUCGUcGCGGUCGucGccCUCGGAGg -3'
miRNA:   3'- -GGa---AGCAcUGCCAGCucCu-GAGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 192486 0.66 0.978676
Target:  5'- aCgcgCG-GACGGggacgcgcUCGAGGucuuCUCGGAGg -3'
miRNA:   3'- gGaa-GCaCUGCC--------AGCUCCu---GAGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 165714 0.67 0.97395
Target:  5'- gCUUCGUc---GUCGGGGGgUCGGGGg -3'
miRNA:   3'- gGAAGCAcugcCAGCUCCUgAGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 176612 0.67 0.971322
Target:  5'- ---cCGUGuCGaucuccaccccGUCGGGGGCUCGGAu -3'
miRNA:   3'- ggaaGCACuGC-----------CAGCUCCUGAGCCUc -5'
9329 3' -54.8 NC_002512.2 + 160653 0.67 0.968507
Target:  5'- cCCUggaUCGaccGCGGcgaCGGGGAUUCGGGGg -3'
miRNA:   3'- -GGA---AGCac-UGCCa--GCUCCUGAGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 160689 0.67 0.965502
Target:  5'- aCUUCGgggggGAcuuCGGg-GGGGACUUGGGGg -3'
miRNA:   3'- gGAAGCa----CU---GCCagCUCCUGAGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 95144 0.68 0.958899
Target:  5'- uCCgccccGGCGGgUCGAGGAC-CGGAGc -3'
miRNA:   3'- -GGaagcaCUGCC-AGCUCCUGaGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 109017 0.68 0.955292
Target:  5'- aCCUcgaggggCG-GGCGGggaCGAGGAC-CGGGGg -3'
miRNA:   3'- -GGAa------GCaCUGCCa--GCUCCUGaGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 224159 0.68 0.955292
Target:  5'- ---gCGUGagGCGGggCGGGGGCgcgCGGAGa -3'
miRNA:   3'- ggaaGCAC--UGCCa-GCUCCUGa--GCCUC- -5'
9329 3' -54.8 NC_002512.2 + 124217 0.68 0.951476
Target:  5'- aCCgUCGUGuuccaGGUCccggggcuGAGGuACUCGGAGu -3'
miRNA:   3'- -GGaAGCACug---CCAG--------CUCC-UGAGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 108482 0.68 0.951476
Target:  5'- gCUgaaCGUGACGGUCGucaAGGGCgaggcCGGGc -3'
miRNA:   3'- gGAa--GCACUGCCAGC---UCCUGa----GCCUc -5'
9329 3' -54.8 NC_002512.2 + 211324 0.68 0.942769
Target:  5'- --aUCGUGGCGGUCcGGGcccgggcGCUgGGGGa -3'
miRNA:   3'- ggaAGCACUGCCAGcUCC-------UGAgCCUC- -5'
9329 3' -54.8 NC_002512.2 + 105777 0.69 0.934066
Target:  5'- aCCUgggCGUcgcauggucGACGG-CGAGGGCgaagacggCGGAGa -3'
miRNA:   3'- -GGAa--GCA---------CUGCCaGCUCCUGa-------GCCUC- -5'
9329 3' -54.8 NC_002512.2 + 150951 0.69 0.934066
Target:  5'- ------cGGCGGcCGcGGACUCGGAGg -3'
miRNA:   3'- ggaagcaCUGCCaGCuCCUGAGCCUC- -5'
9329 3' -54.8 NC_002512.2 + 155080 0.69 0.929168
Target:  5'- --gUCGUGACGuUCGGGGuC-CGGGGg -3'
miRNA:   3'- ggaAGCACUGCcAGCUCCuGaGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.