miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9329 5' -58 NC_002512.2 + 211172 0.66 0.930047
Target:  5'- uGC-CCGaGCGCgUCGC-CGCCcUGCu -3'
miRNA:   3'- gCGaGGCaUGUGgAGCGuGCGGaGCG- -5'
9329 5' -58 NC_002512.2 + 148850 0.66 0.930047
Target:  5'- cCGCUgCCGgaACGCCggcUGC-CGCCUcCGCc -3'
miRNA:   3'- -GCGA-GGCa-UGUGGa--GCGuGCGGA-GCG- -5'
9329 5' -58 NC_002512.2 + 202091 0.66 0.930047
Target:  5'- gGCgCCGguCACCUCGUccgaccGCGuCCUCGUc -3'
miRNA:   3'- gCGaGGCauGUGGAGCG------UGC-GGAGCG- -5'
9329 5' -58 NC_002512.2 + 176932 0.66 0.930047
Target:  5'- gGCUCCGgcGCGCCgaCGC-CGaCUCGUu -3'
miRNA:   3'- gCGAGGCa-UGUGGa-GCGuGCgGAGCG- -5'
9329 5' -58 NC_002512.2 + 172932 0.66 0.930047
Target:  5'- aGCUCgc--CACCuUCGC-CGCCUCGg -3'
miRNA:   3'- gCGAGgcauGUGG-AGCGuGCGGAGCg -5'
9329 5' -58 NC_002512.2 + 152570 0.66 0.930047
Target:  5'- aGC-CCG-AgACCcCGU-CGCCUCGCg -3'
miRNA:   3'- gCGaGGCaUgUGGaGCGuGCGGAGCG- -5'
9329 5' -58 NC_002512.2 + 176661 0.66 0.930047
Target:  5'- aGCUCCcgccagcGCGCCUccugggacuggCGCGuCGCCUUGUg -3'
miRNA:   3'- gCGAGGca-----UGUGGA-----------GCGU-GCGGAGCG- -5'
9329 5' -58 NC_002512.2 + 227410 0.66 0.930047
Target:  5'- cCGC-CCGgaccUACuCUCGCGCGCgggCGCg -3'
miRNA:   3'- -GCGaGGCau--GUG-GAGCGUGCGga-GCG- -5'
9329 5' -58 NC_002512.2 + 195804 0.66 0.926038
Target:  5'- uGCUCCGcUgcggggacaucgucgACGCCgccgucgugggGCACGCCUCGa -3'
miRNA:   3'- gCGAGGC-A---------------UGUGGag---------CGUGCGGAGCg -5'
9329 5' -58 NC_002512.2 + 142073 0.66 0.925014
Target:  5'- -cCUCCGacCGCCgCGCcCGCCUCGa -3'
miRNA:   3'- gcGAGGCauGUGGaGCGuGCGGAGCg -5'
9329 5' -58 NC_002512.2 + 177147 0.66 0.925014
Target:  5'- gCGUUCUGcUGCAgcgUCUcCGCGCGCUUCuGCu -3'
miRNA:   3'- -GCGAGGC-AUGU---GGA-GCGUGCGGAG-CG- -5'
9329 5' -58 NC_002512.2 + 207545 0.66 0.925014
Target:  5'- cCGCUgCG-ACuccucCCUCGCGuC-CCUCGCg -3'
miRNA:   3'- -GCGAgGCaUGu----GGAGCGU-GcGGAGCG- -5'
9329 5' -58 NC_002512.2 + 176761 0.66 0.919764
Target:  5'- uCGCUUCGgACGCCU-GCAgGgCUCGg -3'
miRNA:   3'- -GCGAGGCaUGUGGAgCGUgCgGAGCg -5'
9329 5' -58 NC_002512.2 + 167420 0.66 0.919764
Target:  5'- gCGUcgaUCuCGUGCGgCg-GCACGCCUgCGCg -3'
miRNA:   3'- -GCG---AG-GCAUGUgGagCGUGCGGA-GCG- -5'
9329 5' -58 NC_002512.2 + 146069 0.66 0.919764
Target:  5'- gGC-CCGgACGCCgcCGC-CGCCggCGCg -3'
miRNA:   3'- gCGaGGCaUGUGGa-GCGuGCGGa-GCG- -5'
9329 5' -58 NC_002512.2 + 209469 0.66 0.919764
Target:  5'- gGCUCCGgcgaACACCggcugcucgUCGC-CGUCUacaGCg -3'
miRNA:   3'- gCGAGGCa---UGUGG---------AGCGuGCGGAg--CG- -5'
9329 5' -58 NC_002512.2 + 186279 0.66 0.919764
Target:  5'- aGCuUCCGca-GCCUC-CGCGuCCUCGUc -3'
miRNA:   3'- gCG-AGGCaugUGGAGcGUGC-GGAGCG- -5'
9329 5' -58 NC_002512.2 + 132658 0.66 0.919764
Target:  5'- aGCUCCucucccaGCGCCUCG-ACGUCcCGCc -3'
miRNA:   3'- gCGAGGca-----UGUGGAGCgUGCGGaGCG- -5'
9329 5' -58 NC_002512.2 + 214632 0.66 0.918147
Target:  5'- uCGCggggacgCgGgcCGCCUCGCagucucuccucccgGCGCCUCGg -3'
miRNA:   3'- -GCGa------GgCauGUGGAGCG--------------UGCGGAGCg -5'
9329 5' -58 NC_002512.2 + 77393 0.66 0.916511
Target:  5'- aCGCUCCacccgugGCGCCgUCGCgucacaggacccgggACGCCUCcCa -3'
miRNA:   3'- -GCGAGGca-----UGUGG-AGCG---------------UGCGGAGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.