miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9330 5' -56.5 NC_002512.2 + 162153 0.66 0.952311
Target:  5'- gAGGCCGGcacgCcGACCgcgaaaGCGGCcgcguccgUCGGUCa -3'
miRNA:   3'- -UCUGGCCa---GaCUGGa-----UGUCG--------AGCCAG- -5'
9330 5' -56.5 NC_002512.2 + 34961 0.66 0.949918
Target:  5'- cGACCGGUCggcaugcGACCcaguuaucgauauucUACGcGCgaugCGGUCg -3'
miRNA:   3'- uCUGGCCAGa------CUGG---------------AUGU-CGa---GCCAG- -5'
9330 5' -56.5 NC_002512.2 + 209821 0.66 0.948279
Target:  5'- cGGACuCGGUCUGGCC--CAGUucuucccggaUCGGcUCu -3'
miRNA:   3'- -UCUG-GCCAGACUGGauGUCG----------AGCC-AG- -5'
9330 5' -56.5 NC_002512.2 + 191193 0.66 0.944028
Target:  5'- cGACC-GUCU--CCUccguCGGCUCGGUCu -3'
miRNA:   3'- uCUGGcCAGAcuGGAu---GUCGAGCCAG- -5'
9330 5' -56.5 NC_002512.2 + 186093 0.66 0.944028
Target:  5'- gAGACCGGUCggcuCCUGCuGUgCGGcCc -3'
miRNA:   3'- -UCUGGCCAGacu-GGAUGuCGaGCCaG- -5'
9330 5' -56.5 NC_002512.2 + 168764 0.67 0.924789
Target:  5'- aAGACCuGGUCguuGCCgUACGGCgacaGGUCc -3'
miRNA:   3'- -UCUGG-CCAGac-UGG-AUGUCGag--CCAG- -5'
9330 5' -56.5 NC_002512.2 + 191353 0.67 0.913817
Target:  5'- gGGGuaGGUCgccgcgcGACCU-UGGCUCGGUCu -3'
miRNA:   3'- -UCUggCCAGa------CUGGAuGUCGAGCCAG- -5'
9330 5' -56.5 NC_002512.2 + 127663 0.67 0.913817
Target:  5'- cGGCCGGUCgagGGCCgcucCGGCcgCGG-Cg -3'
miRNA:   3'- uCUGGCCAGa--CUGGau--GUCGa-GCCaG- -5'
9330 5' -56.5 NC_002512.2 + 163825 0.67 0.90195
Target:  5'- aAGAUCGaGUCUGG---GCAGCUCGG-Cg -3'
miRNA:   3'- -UCUGGC-CAGACUggaUGUCGAGCCaG- -5'
9330 5' -56.5 NC_002512.2 + 108525 0.67 0.895686
Target:  5'- cGACCGGcCgggGACCcgACGGCggagaaGGUCc -3'
miRNA:   3'- uCUGGCCaGa--CUGGa-UGUCGag----CCAG- -5'
9330 5' -56.5 NC_002512.2 + 201848 0.67 0.895686
Target:  5'- cGGCCGGcagCUcGCCUGgGGCcugCGGUCc -3'
miRNA:   3'- uCUGGCCa--GAcUGGAUgUCGa--GCCAG- -5'
9330 5' -56.5 NC_002512.2 + 222255 0.68 0.882509
Target:  5'- uGGCgGGUCucgugaUGGCCUGCGcccuGCUCGGg- -3'
miRNA:   3'- uCUGgCCAG------ACUGGAUGU----CGAGCCag -5'
9330 5' -56.5 NC_002512.2 + 209453 0.69 0.838102
Target:  5'- cGGCCGG-CUGAUCUuCGGCUcCGG-Cg -3'
miRNA:   3'- uCUGGCCaGACUGGAuGUCGA-GCCaG- -5'
9330 5' -56.5 NC_002512.2 + 122495 0.69 0.830046
Target:  5'- -cGCCGGcCUGaACCUcuCGGuCUCGGUCu -3'
miRNA:   3'- ucUGGCCaGAC-UGGAu-GUC-GAGCCAG- -5'
9330 5' -56.5 NC_002512.2 + 115680 0.7 0.804889
Target:  5'- uGGGCuCGGgccgGGCCUACAGCaCGGUg -3'
miRNA:   3'- -UCUG-GCCaga-CUGGAUGUCGaGCCAg -5'
9330 5' -56.5 NC_002512.2 + 172251 0.7 0.778404
Target:  5'- uGGUCGGUCUGcucGCCUcACGcccGCUCGGUCg -3'
miRNA:   3'- uCUGGCCAGAC---UGGA-UGU---CGAGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.