miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9331 3' -52.9 NC_002512.2 + 185274 0.65 0.993891
Target:  5'- gGUCGUCGccaugauggaccgCUACGCCAACgUCCUGg-- -3'
miRNA:   3'- -CGGCAGUa------------GAUGCGGUUG-AGGAUgga -5'
9331 3' -52.9 NC_002512.2 + 179442 0.66 0.993357
Target:  5'- gGCCGgCGUCUucuggacauccgGCGCCGGcCUCUU-CCUg -3'
miRNA:   3'- -CGGCaGUAGA------------UGCGGUU-GAGGAuGGA- -5'
9331 3' -52.9 NC_002512.2 + 185028 0.66 0.992385
Target:  5'- cGCCGUCGUCggggagagcccUaggauccuggACGCCGAC-CCggGCCUc -3'
miRNA:   3'- -CGGCAGUAG-----------A----------UGCGGUUGaGGa-UGGA- -5'
9331 3' -52.9 NC_002512.2 + 171970 0.66 0.992385
Target:  5'- cGCCGUCcUC-GCGCUcuuAgUCCUGCUg -3'
miRNA:   3'- -CGGCAGuAGaUGCGGu--UgAGGAUGGa -5'
9331 3' -52.9 NC_002512.2 + 147965 0.66 0.992385
Target:  5'- cGCCGUCGUCgucccccuccacgGCGCaCGAcCUCCgcgaguacaccacgGCCUc -3'
miRNA:   3'- -CGGCAGUAGa------------UGCG-GUU-GAGGa-------------UGGA- -5'
9331 3' -52.9 NC_002512.2 + 210030 0.66 0.991303
Target:  5'- aGCCGUacCGUC-GCGCCuuccGCUCCggggacgucgACCUg -3'
miRNA:   3'- -CGGCA--GUAGaUGCGGu---UGAGGa---------UGGA- -5'
9331 3' -52.9 NC_002512.2 + 158315 0.66 0.991303
Target:  5'- cGCgGUCGUCcgGCGCgAguccgcGCUCCggACCg -3'
miRNA:   3'- -CGgCAGUAGa-UGCGgU------UGAGGa-UGGa -5'
9331 3' -52.9 NC_002512.2 + 107828 0.66 0.991303
Target:  5'- cGCUGUCGUCacagcCGCCGACgCC-GCCc -3'
miRNA:   3'- -CGGCAGUAGau---GCGGUUGaGGaUGGa -5'
9331 3' -52.9 NC_002512.2 + 207707 0.66 0.991303
Target:  5'- aUCGUCAUCgccauCGCCAGCgCCgaguCCa -3'
miRNA:   3'- cGGCAGUAGau---GCGGUUGaGGau--GGa -5'
9331 3' -52.9 NC_002512.2 + 185355 0.66 0.991303
Target:  5'- cGCCGcCAUCgcCGUCGACUgCgacACCUu -3'
miRNA:   3'- -CGGCaGUAGauGCGGUUGAgGa--UGGA- -5'
9331 3' -52.9 NC_002512.2 + 121752 0.66 0.990598
Target:  5'- cCUGUCGUCUGCGaCaugugggccuucgaaCAGCggcCCUACCUg -3'
miRNA:   3'- cGGCAGUAGAUGC-G---------------GUUGa--GGAUGGA- -5'
9331 3' -52.9 NC_002512.2 + 92565 0.66 0.990103
Target:  5'- -aCGUCGgagGCGCCGACgCCgcgGCCg -3'
miRNA:   3'- cgGCAGUagaUGCGGUUGaGGa--UGGa -5'
9331 3' -52.9 NC_002512.2 + 222502 0.66 0.988778
Target:  5'- gGCCGcCuUCUGCGCCuGGCcgCCcGCCg -3'
miRNA:   3'- -CGGCaGuAGAUGCGG-UUGa-GGaUGGa -5'
9331 3' -52.9 NC_002512.2 + 183313 0.66 0.988778
Target:  5'- cGCCGcCAUCacCGCCcGCUUCUucaGCCg -3'
miRNA:   3'- -CGGCaGUAGauGCGGuUGAGGA---UGGa -5'
9331 3' -52.9 NC_002512.2 + 205618 0.66 0.988778
Target:  5'- uGCCGUCGc---CGCCGuccUUCCUGCCc -3'
miRNA:   3'- -CGGCAGUagauGCGGUu--GAGGAUGGa -5'
9331 3' -52.9 NC_002512.2 + 165545 0.66 0.988778
Target:  5'- cGCCGUCAUCga-GCUGGa--CUGCCa -3'
miRNA:   3'- -CGGCAGUAGaugCGGUUgagGAUGGa -5'
9331 3' -52.9 NC_002512.2 + 146913 0.66 0.988778
Target:  5'- gGCCGaCGUCUuccGCGCCGuGCgCCgcgACCUg -3'
miRNA:   3'- -CGGCaGUAGA---UGCGGU-UGaGGa--UGGA- -5'
9331 3' -52.9 NC_002512.2 + 185505 0.67 0.987318
Target:  5'- cGCCGgg--CUGCGCgGGggCCUGCCg -3'
miRNA:   3'- -CGGCaguaGAUGCGgUUgaGGAUGGa -5'
9331 3' -52.9 NC_002512.2 + 188432 0.67 0.986374
Target:  5'- aCCGUCGUCUACGUCGGgagcaagaauaacguCUUC-ACCa -3'
miRNA:   3'- cGGCAGUAGAUGCGGUU---------------GAGGaUGGa -5'
9331 3' -52.9 NC_002512.2 + 185445 0.67 0.985715
Target:  5'- gGCCGUCcUgUcCGCCcucuGCUCCUucGCCg -3'
miRNA:   3'- -CGGCAGuAgAuGCGGu---UGAGGA--UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.