miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9331 5' -59.5 NC_002512.2 + 206565 0.66 0.888751
Target:  5'- --cGGcGGCCCGGGGCGccagaacugCAGGuGCc -3'
miRNA:   3'- ccuCCuCCGGGCCCUGCa--------GUUCuCGc -5'
9331 5' -59.5 NC_002512.2 + 94618 0.66 0.888751
Target:  5'- -cAGGcGGCCCaGGccuCGUCGAGcGCGg -3'
miRNA:   3'- ccUCCuCCGGGcCCu--GCAGUUCuCGC- -5'
9331 5' -59.5 NC_002512.2 + 75766 0.66 0.888751
Target:  5'- cGGAGaccgcGGaGCCCGGGAgGaCGgggcAGAGCGg -3'
miRNA:   3'- -CCUCc----UC-CGGGCCCUgCaGU----UCUCGC- -5'
9331 5' -59.5 NC_002512.2 + 149455 0.66 0.884878
Target:  5'- aGGAaGGGGaCCCGGGACGccgccgaCAgccacgccaccaucgGGGGCGg -3'
miRNA:   3'- -CCUcCUCC-GGGCCCUGCa------GU---------------UCUCGC- -5'
9331 5' -59.5 NC_002512.2 + 132089 0.66 0.882256
Target:  5'- cGGAgccGGAGcGCucggaCCGGGGC-UCGAGGGCc -3'
miRNA:   3'- -CCU---CCUC-CG-----GGCCCUGcAGUUCUCGc -5'
9331 5' -59.5 NC_002512.2 + 92185 0.66 0.882256
Target:  5'- cGGuGGAGGacaaCCGGGugGUggcCAAcAGCu -3'
miRNA:   3'- -CCuCCUCCg---GGCCCugCA---GUUcUCGc -5'
9331 5' -59.5 NC_002512.2 + 179034 0.66 0.871457
Target:  5'- -uAGcAGGUCCGcGGACGUCAgcgccgucauccgggGGAGCa -3'
miRNA:   3'- ccUCcUCCGGGC-CCUGCAGU---------------UCUCGc -5'
9331 5' -59.5 NC_002512.2 + 186365 0.66 0.86868
Target:  5'- ---cGGGGCCgGGGACGUCAu--GUGu -3'
miRNA:   3'- ccucCUCCGGgCCCUGCAGUucuCGC- -5'
9331 5' -59.5 NC_002512.2 + 160742 0.66 0.86868
Target:  5'- gGGGGGAacggcgccGGcCCCGGGcACGgaggucccGGAGCGg -3'
miRNA:   3'- -CCUCCU--------CC-GGGCCC-UGCagu-----UCUCGC- -5'
9331 5' -59.5 NC_002512.2 + 198016 0.66 0.861608
Target:  5'- cGGAcGGGGGCgaGGGACGcgcgcgCGAGGGg- -3'
miRNA:   3'- -CCU-CCUCCGggCCCUGCa-----GUUCUCgc -5'
9331 5' -59.5 NC_002512.2 + 142187 0.66 0.85945
Target:  5'- gGGAGaAGGaUCCGGGGucgugucggcgcgcCGUUAAGAGCc -3'
miRNA:   3'- -CCUCcUCC-GGGCCCU--------------GCAGUUCUCGc -5'
9331 5' -59.5 NC_002512.2 + 216488 0.66 0.854352
Target:  5'- -aGGGAGGCgCaGcGCGUCAGGuAGCGg -3'
miRNA:   3'- ccUCCUCCGgGcCcUGCAGUUC-UCGC- -5'
9331 5' -59.5 NC_002512.2 + 191271 0.66 0.854352
Target:  5'- cGGGGAGGC--GGcGACGggGAGGGCGg -3'
miRNA:   3'- cCUCCUCCGggCC-CUGCagUUCUCGC- -5'
9331 5' -59.5 NC_002512.2 + 124847 0.66 0.854352
Target:  5'- cGAGcGAGGCCCGcgacgaggacccGGACGagAAccGGGCGg -3'
miRNA:   3'- cCUC-CUCCGGGC------------CCUGCagUU--CUCGC- -5'
9331 5' -59.5 NC_002512.2 + 152321 0.66 0.853616
Target:  5'- gGGGGGA-GCCCacaGGGugGUCAuGAcgacaccGCGg -3'
miRNA:   3'- -CCUCCUcCGGG---CCCugCAGUuCU-------CGC- -5'
9331 5' -59.5 NC_002512.2 + 152241 0.66 0.853616
Target:  5'- gGGGGGA-GCCCacaGGGugGUCAuGAcgacaccGCGg -3'
miRNA:   3'- -CCUCCUcCGGG---CCCugCAGUuCU-------CGC- -5'
9331 5' -59.5 NC_002512.2 + 152010 0.66 0.853616
Target:  5'- gGGGGGA-GCCCacaGGGugGUCAuGAcgacaccGCGg -3'
miRNA:   3'- -CCUCCUcCGGG---CCCugCAGUuCU-------CGC- -5'
9331 5' -59.5 NC_002512.2 + 215149 0.67 0.846918
Target:  5'- cGGGGGAGGCgacgagcaCCuGGcCGUCcugcugcucgGGGAGCGg -3'
miRNA:   3'- -CCUCCUCCG--------GGcCCuGCAG----------UUCUCGC- -5'
9331 5' -59.5 NC_002512.2 + 107141 0.67 0.846918
Target:  5'- cGGAGGAgagGGCCCGGaaaucgcCGUaagaGAGGGUGu -3'
miRNA:   3'- -CCUCCU---CCGGGCCcu-----GCAg---UUCUCGC- -5'
9331 5' -59.5 NC_002512.2 + 205218 0.67 0.839311
Target:  5'- cGAGc-GGCCCGGGACGgagaUCGGGA-CGg -3'
miRNA:   3'- cCUCcuCCGGGCCCUGC----AGUUCUcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.