miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9332 3' -62.1 NC_002512.2 + 127382 0.66 0.784128
Target:  5'- aCGGCCGcGaCUCCcgCGGCGGGaaCgACGc -3'
miRNA:   3'- -GCCGGC-C-GAGGa-GUCGCCCagGaUGC- -5'
9332 3' -62.1 NC_002512.2 + 114167 0.66 0.784128
Target:  5'- gGGcCCGGUccUCCUCGGUGGcG-CCgGCGu -3'
miRNA:   3'- gCC-GGCCG--AGGAGUCGCC-CaGGaUGC- -5'
9332 3' -62.1 NC_002512.2 + 157086 0.66 0.784128
Target:  5'- -cGCCGGCgCCcaCGGCGGGcCCgucccgGCGa -3'
miRNA:   3'- gcCGGCCGaGGa-GUCGCCCaGGa-----UGC- -5'
9332 3' -62.1 NC_002512.2 + 190080 0.66 0.775512
Target:  5'- gCGGCCGGU----CAGCGGGcUCggCUGCGg -3'
miRNA:   3'- -GCCGGCCGaggaGUCGCCC-AG--GAUGC- -5'
9332 3' -62.1 NC_002512.2 + 144833 0.66 0.775512
Target:  5'- gGGCaCGGCgcugCUCAGCauGUCCUACu -3'
miRNA:   3'- gCCG-GCCGag--GAGUCGccCAGGAUGc -5'
9332 3' -62.1 NC_002512.2 + 217691 0.66 0.774644
Target:  5'- gGGCUGGCUCUUCcccgccGGCGucgacgaGGUCCgcuucagggGCGg -3'
miRNA:   3'- gCCGGCCGAGGAG------UCGC-------CCAGGa--------UGC- -5'
9332 3' -62.1 NC_002512.2 + 184557 0.66 0.766785
Target:  5'- gGGCCGGCggacggcCCUCcgacccGCGGG-CCggcaggGCGg -3'
miRNA:   3'- gCCGGCCGa------GGAGu-----CGCCCaGGa-----UGC- -5'
9332 3' -62.1 NC_002512.2 + 181586 0.66 0.766785
Target:  5'- gCGG-CGGCaggggCGGCGGGUCCgcgACGu -3'
miRNA:   3'- -GCCgGCCGagga-GUCGCCCAGGa--UGC- -5'
9332 3' -62.1 NC_002512.2 + 175793 0.66 0.766785
Target:  5'- aGGCCGaCagCUUGGCGGcGUCCcgGCGg -3'
miRNA:   3'- gCCGGCcGagGAGUCGCC-CAGGa-UGC- -5'
9332 3' -62.1 NC_002512.2 + 156477 0.66 0.766785
Target:  5'- gGGgCGGCgggCUCGGCGGG-CUggGCGg -3'
miRNA:   3'- gCCgGCCGag-GAGUCGCCCaGGa-UGC- -5'
9332 3' -62.1 NC_002512.2 + 169623 0.66 0.757955
Target:  5'- uCGGCCGGCaggUCCagGuGuCGGGU-CUGCGg -3'
miRNA:   3'- -GCCGGCCG---AGGagU-C-GCCCAgGAUGC- -5'
9332 3' -62.1 NC_002512.2 + 197601 0.66 0.749029
Target:  5'- aCGaGCCGccCUCCUCAuGCGGGccgCCUAUu -3'
miRNA:   3'- -GC-CGGCc-GAGGAGU-CGCCCa--GGAUGc -5'
9332 3' -62.1 NC_002512.2 + 199621 0.66 0.749029
Target:  5'- gGcGCCGGCUCCgcgCGuccGCGGGgacccguuUCCcGCGg -3'
miRNA:   3'- gC-CGGCCGAGGa--GU---CGCCC--------AGGaUGC- -5'
9332 3' -62.1 NC_002512.2 + 125183 0.66 0.749029
Target:  5'- uGGCCGGCcCCUUccaGGUGGccGUCCaggACGc -3'
miRNA:   3'- gCCGGCCGaGGAG---UCGCC--CAGGa--UGC- -5'
9332 3' -62.1 NC_002512.2 + 128797 0.66 0.749029
Target:  5'- uGGCCgGGgUCUUCAGCGagaGGUCg-GCGg -3'
miRNA:   3'- gCCGG-CCgAGGAGUCGC---CCAGgaUGC- -5'
9332 3' -62.1 NC_002512.2 + 220390 0.66 0.746333
Target:  5'- gGGCCGGC-CgUCGucuacccgccgcucGCGGGcccgcccgCCUACGg -3'
miRNA:   3'- gCCGGCCGaGgAGU--------------CGCCCa-------GGAUGC- -5'
9332 3' -62.1 NC_002512.2 + 482 0.66 0.740014
Target:  5'- aGGaCCGGC-CCUCAcGaCGGGUgCCUGu- -3'
miRNA:   3'- gCC-GGCCGaGGAGU-C-GCCCA-GGAUgc -5'
9332 3' -62.1 NC_002512.2 + 127499 0.66 0.730917
Target:  5'- uCGGCUGGaaCCUCGGCGG--CCUucACGu -3'
miRNA:   3'- -GCCGGCCgaGGAGUCGCCcaGGA--UGC- -5'
9332 3' -62.1 NC_002512.2 + 156437 0.67 0.721747
Target:  5'- gCGGCCgggcuggggGGCUCCgggggCGGCGGGggaCU-CGg -3'
miRNA:   3'- -GCCGG---------CCGAGGa----GUCGCCCag-GAuGC- -5'
9332 3' -62.1 NC_002512.2 + 90456 0.67 0.721747
Target:  5'- gCGGCCGGg-CCagCuGCGGGUCCc-CGa -3'
miRNA:   3'- -GCCGGCCgaGGa-GuCGCCCAGGauGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.